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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGTCACAAATTTTGATGAGATCCCTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGgtgcacacaatttcatattccacttgaatacttttagatcatagcatgattgatggcagtggataatgcataaacttccctcgaattctgcaaattgaga...

Basic information

species Glycine max
transcript GLYMA17G29730.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193516300|gb|FK472540.1|FK472540
EST:     CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAG                         ATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCT
genomic: CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGgtgcacacaa ... tgggttatagATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCT
EST: gi|193534862|gb|FK489026.1|FK489026
EST:     CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAG                         ATGGAAGGAATCACTTCTTCAAATCCTTCA
genomic: CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGgtgcacacaa ... tgggttatagATGGAAGGAATCACTTCTTCAAATCCTTCA
EST: gi|10844008|gb|BF070887.1|BF070887
EST:     CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAG                         ATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCTCATCTTT
genomic: CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGgtgcacacaa ... tgggttatagATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCTCATCTTT
EST: gi|51336058|gb|CO979924.1|CO979924
EST:     CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAG                         ATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCTCATCTTTGAACACT
genomic: CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGgtgcacacaa ... tgggttatagATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCTCATCTTTGAACACT
EST: gi|9204441|gb|BE330665.1|BE330665
EST:     CTTTTCACTGTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAG                         ATGGAAGGAATCACTTCT
genomic: CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGgtgcacacaa ... tgggttatagATGGAAGGAATCACTTCT
EST: gi|51345216|gb|CO985949.1|CO985949
EST:     CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAG                         ATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCTCATCTTTGAACACT
genomic: CTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGgtgcacacaa ... tgggttatagATGGAAGGAATCACTTCTTCAAATCCTTCATCTGGCTCATCTTTGAACACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTGTCACAAATTTTGATGAGATCCCTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAATAAAGgtgcacacaatttcatattccacttgaatacttttagatcatagcatgattgatggcagtggataatgcataaacttccctcgaattctgcaaattgaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc