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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTCCAATACAAAGTGCAAGAAGGGGTCTAAGTATTGCTGGGGAGTCAAATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcacataatcctccatttttatttaaagctttaggtcactaaggggctgtttgttttgagaatatattttttgttttcattttatattttacat...

Basic information

species Glycine max
transcript GLYMA13G35120.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686641|gb|AW757298.1|AW757298
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|207692684|gb|GD676197.1|GD676197
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|10845021|gb|BF068210.1|BF068210
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTCCCA                         CGTTGCGTTGTTCTTGACAT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACAT
EST: gi|207783371|gb|GD755903.1|GD755903
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|13481676|gb|BG511019.1|BG511019
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|208064971|gb|GD862985.1|GD862985
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|207827146|gb|GD797849.1|GD797849
EST:     ATGCGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGTCCAATACAAAGTGCAAGAAGGGGTCTAAGTATTGCTGGGGAGTCAAATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcacataatcctccatttttatttaaagctttaggtcactaaggggctgtttgttttgagaatatattttttgttttcattttatattttacat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA