Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGAGACAACATGGACTGTGCTCAGGAAGTTTGGATATAATGATGATATCAAGCTTGCTGATGATCTAATTCCACCTATAAAATGTGCTCCTGATCAGgtatttctttggagatgaattgatttgacatgttatgtgcattgtgtgtgatatatttttttatacctgtctgaaaataattgtggatgatagggaactttgtcttgttctgatcaagattgactttgatgtatgcag
Basic information
species | Glycine max |
transcript | GLYMA20G37730.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G37730.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0128g00400.t01 (Vitis vinifera), 5'ss of exon 7
TCTTGAGACAACATGGACTGTGCTCAGGAAGTTTGGATATAATGATGATATCAAGCTTGCTGATGATCTAATTCCACCTATA---AAATGTGCTCCTGATCAGgtatttctttggagatgaattgatttgacatgttatgtgcattgtgtgtgatatatttttttatacctgtctgaaaataattgtggatgatagggaactttgtcttgttctgatcaagattgactttgatgtatgcag
||||||||||||||||| || ||||||||||| || ||| |||||||||| || || ||||| |||||| | ||| | ||||||||||||||| | || | | || || | | | | | | | |||| | || || | ||| | | | || ||| | | | | |
---CGAGACAACATGGACTGTCCTAAGGAAGTTTGGGTACAATAATGATATCAAACTAAGGGAGGATCTCATTCCATTGTCATTTAAACGGGCTCCTGATCAGgtaacttcttattggtaaac-aatcagcattatggtcttgaatttgtggca-atgttcagatgcttttgttaagtgctgagtctgc-tgacaattatttgtat-----------------------------------
upper sequence: GLYMA20G37730.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S95_108V6.1 (Physcomitrella patens), 5'ss of exon 5
TCTTGAGACAACATGGACTGTGCTCAGGAAGTTTGGATATAATGATGATATCAAGCTTGCTGATGATCTAATT------CCACCTATAAAATGTGCTCCTGATCAGgtatttctttggagatgaattgatttgacatgttatgtgcattgtgtgtgatatatttttttatacctgtctgaaaataattgtggatgatagggaactttgtcttgttctgatcaagattgactttgatgtatgcag
|||||||||||| |||||||| |||||||| ||||||||||| |||| ||| || ||| || || || | | || | || ||||||| |||| | | | | || | | || || || || ||| ||| | | | | | | | ||| ||||| | ||| || |||| || | |
------GACAACATGGACAGTGCTCAGAAAGTTTGGTTATAATGATGAAATCACGCTGCGAGACGATGTACTTTCTAGTCCTTCATTCAAGCGAGCATCTGATCAAgtatgttccttaaact---tttagctagcaggtc-------ttctgaaggat-cattgatctgaaa--gacagtatata-ttgtgaaacataaa-----ctgaactgtttaaatgagta-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13311651|gb|BG405302.1|BG405302EST: CTGATGATCTAATTCCACCTATAAAATGTGCTCCTGATCAG AGTGTGGAGCTGACAAATGAAGCAGTTGAGTTTTTGAGGGCAATTTTTGAT
genomic: CTGATGATCTAATTCCACCTATAAAATGTGCTCCTGATCAGgtatttcttt ... atgtatgcagAGTGTGGAGCTGACAAATGAAGCAGTTGAGTTTTTGAGGGCAATTTTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGAGACAACATGGACTGTGCTCAGGAAGTTTGGATATAATGATGATATCAAGCTTGCTGATGATCTAATTCCACCTATAAAATGTGCTCCTGATCAGgtatttctttggagatgaattgatttgacatgttatgtgcattgtgtgtgatatatttttttatacctgtctgaaaataattgtggatgatagggaactttgtcttgttctgatcaagattgactttgatgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT