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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAGGAATGTTTATGTTCAATTTTCCTCACATCAGGAATTAACAACAATGGAGCAAAGTCAAGGACGAGGAGATGAGgttggccttttttgtgtttaccttttggattgaaaactgtatgctttatcttgtcagttgcttacaaaagcagagagaaatgattgacctttttctttct...

Basic information

species Glycine max
transcript GLYMA20G30820.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193682699|gb|FK623419.1|FK623419
EST:     CAATGGAGCAAAGTCAAGGACGAGGAGATGAG                         CCAAACCGAATTCTCTTAGTCACAGTTCATCACATGCTGTATCCTATGACA
genomic: CAATGGAGCAAAGTCAAGGACGAGGAGATGAGgttggccttt ... ggatgcacagCCAAACCGAATTCTCTTAGTCACAGTTCATCACATGCTGTATCCTATGACA
EST: gi|208136236|gb|GD940091.1|GD940091
EST:     ACGAGGAGATGAG                         CCAAACCGAATTCTCTTAGTCACAGTTCATCACATGTTGTATCCTATGACT
genomic: ACGAGGAGATGAGgttggccttt ... ggatgcacagCCAAACCGAATTCTCTTAGTCACAGTTCATCACATGCTGTATCCTATGACA
EST: gi|151404880|gb|EV274694.1|EV274694
EST:     CACATCAGGAATTAACAACAATGGAGCAAAGTCAAGGACGAGGAGATGAG                         CCAAACCGAATTCTCTTAGTCACGGTTCATCACATGCTGTATCCTATGACA
genomic: CACATCAGGAATTAACAACAATGGAGCAAAGTCAAGGACGAGGAGATGAGgttggccttt ... ggatgcacagCCAAACCGAATTCTCTTAGTCACAGTTCATCACATGCTGTATCCTATGACA
EST: gi|27809194|gb|CB063616.1|CB063616
EST:     CACATCAGGAATTAACAACAATGGAGCAAAGTCAAGGACGAGGAGATGAG                         CCAAACCGAATTCTCTTAGTCACAGTTCATCACATGCTGTATCCTATGACA
genomic: CACATCAGGAATTAACAACAATGGAGCAAAGTCAAGGACGAGGAGATGAGgttggccttt ... ggatgcacagCCAAACCGAATTCTCTTAGTCACAGTTCATCACATGCTGTATCCTATGACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGAGGAATGTTTATGTTCAATTTTCCTCACATCAGGAATTAACAACAATGGAGCAAAGTCAAGGACGAGGAGATGAGgttggccttttttgtgtttaccttttggattgaaaactgtatgctttatcttgtcagttgcttacaaaagcagagagaaatgattgacctttttctttct

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG