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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatgctgtttaattacttcattaaagtttagaattttgcctattgagcttctgatgtttccaaatatttttttaatgtgaatcatctttcatgcttgttccttttgtctttccctttattcttattatttactaatgaacctgctggatatcctcatttatag

Basic information

species Glycine max
transcript GLYMA20G28420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G22425.2 (Arabidopsis thaliana), 5'ss of exon 5
GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtat--gctgttt-aatta-cttcattaaagtttaga-attttgcctattgagcttctgatgtttccaaatatttttttaatgtgaatcatctttcatgcttgttccttttgtctttccctttattcttattatttactaatgaacctgctggatatcctcatttatag
|| |||||||| |||||| ||||  |||| || ||||| ||||| |||||||| ||||| |||||||||||||||||  | | |  |||  |  ||||  |||| ||   |||||    | ||     |||   |  | ||  ||  || | ||     ||  ||  | | |||||    ||||                                                                 
GACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGgttctctctttgctcctggaattgtcttcttttgggtttatctgtgttattcgttgt-ttagtaatcattgaaagtgttgccaaaaattgtttaacctttcg-atttgtag---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295567|gb|FG988141.1|FG988141
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|254323948|gb|GR836180.1|GR836180
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|192298863|gb|FG987608.1|FG987608
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|16278546|gb|BI942961.1|BI942961
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|58021912|gb|CX708653.1|CX708653
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|16105448|gb|BI893188.1|BI893188
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|120528942|gb|EH257076.1|EH257076
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|120496152|gb|EH224319.1|EH224319
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|12691429|gb|BG157765.1|BG157765
EST:     ATAATTNTG-ACATACCCACTCAAAAGGGTTGG-ACATATGATACTCAAG                         TTG-TGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTTGTATGACACT
genomic: ATAATT-TGGACATACCCACTCAGA-GGGTTGGGACATATGATACTCA-Ggtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACT
EST: gi|16278135|gb|BI942744.1|BI942744
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
EST: gi|151393539|gb|EV263414.1|EV263414
EST:     GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAG                         TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT
genomic: GTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatg ... tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTT