1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTCTGTTGCATCCAGTGTGGTAGTTCTCTCTCCAAATAACTTTGATGAGGTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatagaataaaccatagagatctgtcaaaactttattatatagttagatttttttcattttcaaatttttcaatatttttcttgataaatttaattatgtcttccag
species | Glycine max |
transcript | GLYMA19G41690.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGTGGTCATTGCAAGGCCCTTGCCCCTEST: gi|7146459|gb|AW508381.1|AW508381
genomic: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGTGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGTGGTCATTGCAAGGCCCTTGCCCCTEST: gi|7327245|gb|AW620967.1|AW620967
genomic: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGTGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGTGGTCATTGCAAGGCCCTTGCCCCTEST: gi|58024257|gb|CX710998.1|CX710998
genomic: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGTGGTCATTGCAAGGCCCTTGCCCCT
EST: TCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGTGGTCATTGCAAGGCCCTTGCCCCTEST: gi|192330240|gb|FK019835.1|FK019835
genomic: TCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGTGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGTGGTCATTGCAAG-CCCTTGCCCCTEST: gi|192299182|gb|FG990454.1|FG990454
genomic: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGTGGTCATTGCAAGGCCCTTGCCCCT
EST: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGTGGTCATTGCAAGGCCCTTGCCCCTATTTATGEST: gi|151410365|gb|EV280180.1|EV280180
genomic: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGTGGTCATTGCAAGGCCCTTGCCCCTATTTATG
EST: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATG GTGTGGTCATTGCAAAGGCCCTTGTCCCT
genomic: GTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatag ... tgtcttccagGTGTGGTCATTGCAA-GGCCCTTGCCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGTTGCATCCAGTGTGGTAGTTCTCTCTCCAAATAACTTTGATGAGGTTGTCTTCGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGgtaagtatagaataaaccatagagatctgtcaaaactttattatatagttagatttttttcattttcaaatttttcaatatttttcttgataaatttaattatgtcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA