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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgcagataaccttatgcttgttctaattttagtaatctatccatcttatatcagcactttgacatgaccttgttatctcttctag

Basic information

species Glycine max
transcript GLYMA19G36130.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258245|gb|BE346392.1|BE346392
EST:     GCCAAATCCTTTGCTGAGAAGT-AAAATTTGA-GGAG                         AA-TCTATGCAGACCCCACTCACTCATCATATGAAGCCTTAAATTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTT
EST: gi|120495842|gb|EH224009.1|EH224009
EST:     TTTGCTGAAGAAGTCCAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: TTTGCTG-AGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|151403056|gb|EV272866.1|EV272866
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|192297273|gb|FG990621.1|FG990621
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|15202597|gb|BI425484.1|BI425484
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCA
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCA
EST: gi|15284825|gb|BI468716.1|BI468716
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAAGCCTTAAATTTTGGTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|120496088|gb|EH224255.1|EH224255
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|9902843|gb|BE611811.1|BE611811
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|27425152|gb|CA936672.1|CA936672
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|117557702|gb|EG702087.1|EG702087
EST:     GCCAAATCCTTTGCTGAGGAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|120495642|gb|EH223809.1|EH223809
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|31473394|gb|CD415407.1|CD415407
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgcagataaccttatgcttgttctaattttagtaatctatccatcttatatcagcactttgacatgaccttgttatctcttctag

- - - - - - - - AGAAGT
- - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - -  AAGGAG