1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAAGCATTTCTGCTTTAGGAATACCAGAGATGTTAGCACGTCATCATCTATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttttctttcatcttagttttatctgtttactattgtcctcatgagatttttttttctaaagcatttcttcagtaagcttgtcatggcagaaac...
species | Glycine max |
transcript | GLYMA17G01230.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|193539549|gb|FK497791.1|FK497791
genomic: CGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: CCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|208101134|gb|GD900551.1|GD900551
genomic: CCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGEST: gi|208320363|gb|GE120432.1|GE120432
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCG
EST: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGEST: gi|193729793|gb|FK664739.1|FK664739
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTG
EST: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAA-CGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|193531934|gb|FK488800.1|FK488800
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: GACACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|193723456|gb|FK660468.1|FK660468
genomic: GACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: CCGTTAGTGCTGTATCTAATTTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|193701372|gb|FK640035.1|FK640035
genomic: CCGTTAGTGCTG-ATC-AA-TTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: CACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTAATAGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGAEST: gi|308098720|gb|HO760461.1|HO760461
genomic: CACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGT-AT-GATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGA
EST: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|193307006|gb|FK272946.1|FK272946
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: TTTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|192314884|gb|FK010702.1|FK010702
genomic: -TTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|208170152|gb|GD968337.1|GD968337
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: AATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|208048249|gb|GD844786.1|GD844786
genomic: AATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: CTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|208247644|gb|GE050338.1|GE050338
genomic: CTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|193470146|gb|FK438803.1|FK438803
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: CCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCEST: gi|193592252|gb|FK546520.1|FK546520
genomic: CCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: CACCCGTTAGTGCTGATCAATTATTGCCATATAAG GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: CACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGCATTTCTGCTTTAGGAATACCAGAGATGTTAGCACGTCATCATCTATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttttctttcatcttagttttatctgtttactattgtcctcatgagatttttttttctaaagcatttcttcagtaagcttgtcatggcagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT