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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgcttttctttcatgaattgttgatacttaatacttgggctttccgataaaagataacgttttttaaatctgacaaaatctgctgcagatagtggga...

Basic information

species Glycine max
transcript GLYMA17G00910.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 5'ss of exon 5
TGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgcttttctttcatgaattgttgatacttaatacttgggctttccgataaaagataacgttttttaaatctg---acaa-aatctgctgcagatagtggga
|| |||||||||   | || | ||| ||  |||||||| ||||||| || ||||| |||||||||||||| ||||| || || |||||||| || || |||| |||      ||| |   ||| |  ||| |  |  |   ||   |    |||  | |||     || |||  |   |||| | | |||     | ||||   
TGTTTGCAGCACAGTCAATTCTATTGGGCATCAATGATATTGTTGTAGCCGGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAGgtctgcaaagtgttctt---ttggttgtacatcctgatacagcgcacaataaaagtacaacagaaatttaattggcaaacaatagtatgcgaggaaaagtgta-

upper sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G866758_T02 (Zea mays), 5'ss of exon 5
TGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgcttttctttcatgaattgttgatacttaatacttgggctttccgataaaagataacgttttttaa--atctgacaaaatctgctgcagatagtggga--
|| |||||||||   | || ||||| ||| |||||||| |||||||||||||||| |||||||||||||| ||||| || ||||||||||| || || |||| |||  || || | ||   ||   ||| | |||| | | |||     | |  | || |   | || |   || ||  | |  |         || |      
TGTTTGCAGCACAGTCAATTCAATTGGGTATCAATGATATTGTTGTGGCTGGTGGCATGGAAAGCATGTCCAATGCCCCAAAGTACATTGCTGAAGCTAGgtatgcaattattacttgg--tggatatattcaata-tcgagctgcataa-accaaatgatagtcttaagttatttggtagatacatgcatgcttacttatctt

upper sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 3
TGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgc---ttttctttcatgaattgttgatacttaatacttgggctttccgataa-aagataacgttttttaaatctgacaaaatctgctgcagatagtggga
|| |||||||||   | || ||| | ||| |||||||| |||||||||| ||||| |||||||||||||| ||||| || ||||||||||| || || ||||   |   | || |||  || ||   |   |  | |  ||        |  || | ||  | | ||| ||||     || | |  |   |  |  || | |  
TGTTTGCAGCACAGTCAATTCAACTGGGTATCAATGATATTGTTGTGGCAGGTGGCATGGAAAGCATGTCCAATGCCCCAAAGTACATTGCTGAAGCTAGgtacacaagtattattttgtggatacatctaatatcaggctgaaataaccgaattataatcttaagttatttag--tggatacatgcctgtttacttatttg--

upper sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G085474_T04 (Zea mays), 5'ss of exon 5
TGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgct--tttctttcatgaattgttgatacttaatacttgggctttccgataaaagataacgttttttaaatctgacaaaatctgctgcagatagtggga--
|| | || ||||   | || ||  | ||| |||||||| |||||||||| ||||| |||||||||||||| ||||| || ||||||||||| || || |||| |||    | || || |||    |  |    |  | |  | || || | | |  | ||   |  || |    |  | |  | ||| |  |  || |   |  
TGTTCGCCGCACAGTCAATTCAGCTGGGTATCAATGATATTGTTGTGGCAGGTGGCATGGAAAGCATGTCCAATGCCCCAAAGTACATTGCTGAAGCTAGgtatgcaaagtactgtcttgatacatccag---tggtgccggtgcattaccaaagcatatcttgagttatttcacatataggagctgtt-tacttatttaaatt

upper sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0089g00570.t01 (Vitis vinifera), 5'ss of exon 2
TGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgcttttctt-tcatg-aattgttgatacttaatacttgggctttccgataaaagataacgttttttaaatctgacaaaatctgctgcagatagtggga--------------------------------------------------------------------
   |   ||   | |   ||       ||   |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| ||| | |  || || | ||| ||||||    |||||  ||   | ||   || |   | |  |      |  || || |   |   ||  |   || ||   || ||  |  |||                                                                        
-TTTAAGAGGGTTGAGAGTAT------GTAAAAATGATGTAGTTGTGGCTGGTGGCATGGAAAGAATGTCTAATGCGCCTAAATACCTAGTAGATGCAACgttagctttttgggtcatgtgatcaattatgtctattgagttgcttgcttagtttaacatgattctcagtatgtg-aacgaagcatgttg-ggccagtacatattgttgccgttcttactaatagggagaagtgtctatgtatctaagctgactctgagcttataaacag

upper sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0089g00590.t01 (Vitis vinifera), 5'ss of exon 4
-TGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgcttttctt-tcatg-aattgttgatacttaatacttgggctttccgataaaagataacgttttttaaatctgacaaaatctgctgcagatagtggga
 || | |    |       |   | |  ||   |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| ||| | |  || || | ||| ||||||    |||||  ||   |  |   || |   | |  |      |  || || |   |   ||  |   |||||   || ||  |  |||    
GTGATAGTT-TAAGAGGGTTGAGAGTATGTAAAAATGATGTAGTTGTGGCTGGTGGCATGGAAAGTATGTCTAATGCGCCTAAATACCTAGTAGATGCAACgttagctttttgggtcatgtgatcaattttgtctattgagttgcttgcttagtttaacatgattctcagtatgtg-aacaaagcatgttg-ggccagtacat

upper sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 4
TGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgcttttctttcatgaattgttgatacttaatacttgggctttccgataaaagataacgttttttaaatctgacaaaatctgctgcagatagtggga-
|| |||| ||||   | || ||||| ||| |||||||||| |||||||||||||| |||||||| ||||| ||||| ||||| ||| | |   | || ||||| |  |     | | ||||  | || |            |   |   | |||| ||||       |||   | | ||    |  |      | ||    
TGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTGTGGCTGGTGGCATGGAAAGTATGTCTAATGCGCCTAAATACCTAGTATATGCAAGgttagtatggaaatta-gaatcttggaaatcattcgaagatgacatttaaaaaaaaataaaaaaaaataataataaaaacgaatcttagcatcaatgaagc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587273|gb|DB965935.1|DB965935
EST:     GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAG                         GAAAGGGTCTCGGTATGGACATGATACCATCATTGA
genomic: GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgctttt ... tctaaaacagGAAAGGGTCTCGGTATGGACATGATACCATCATTGA
EST: gi|9986219|gb|BE660327.1|BE660327
EST:     GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAG                         GAAAGGGTCTCGGTNTGGACATGATACCATCATTGATGGTATGGTCAAAGA
genomic: GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgctttt ... tctaaaacagGAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGA
EST: gi|298194892|gb|HO043364.1|HO043364
EST:     GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAG                         GGAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGA
genomic: GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgctttt ... tctaaaacagGAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGA
EST: gi|192294916|gb|FG986639.1|FG986639
EST:     GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAG                         GAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGA
genomic: GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgctttt ... tctaaaacagGAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGA
EST: gi|19452347|gb|BM953757.1|BM953757
EST:     GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAG                         GAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGA
genomic: GGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGgtttgctttt ... tctaaaacagGAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGA