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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttagaacggtttgtcttattttgttttgcctgaagttcacttatccattgaaaagtaatgggaagttgttcctggacatttcag

Basic information

species Glycine max
transcript GLYMA13G16170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 5
AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttagaacggtttgtcttattttgttttgcctgaagttcacttatccattgaaaagtaatgggaagttgttcctggacatttcag
 || |||||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||| || || ||  | || |||||||| || ||  ||||||| ||      ||    ||  || | ||   ||||    | | || |   |   |   |  | | | | ||   |          
CAAAAAGGAGACTGGCTATGTTGGCCTTAAGAATCAAGGGGCTACATGCTACATGAATTCTCTTCTTCAGACGCTTTACCATATTCCGTACTTCCGAAAGgtgaggctaaatt--tgtaaattctcttaaatgaatccta-tgatgcgaggctgatacagagaatgatattttag----------

upper sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 5
AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttagaacggtttgtcttattttgttttgcctgaagt-tcacttatcc--attgaaaagtaatgggaagttgttcctggacatttcag
 || ||||| || || |||||||| || ||||| ||||||||||| ||||||||||| ||||| || |||||  |||| ||||| || ||||| || |||||  ||     ||   || |  |  | | | |||  | | |  || |   | | || | |||| | || ||  || | |         
GAAAAAGGAAACAGGATATGTTGGTCTAAAGAATCAAGGAGCTACCTGTTATATGAACTCTCTTCTACAAACACTGTACCATATACCATATTTCAGGAAGgtctgagatcattactttttcctagtctacatgatttgttaagtacctgaacttaagactaattgaaatttcatcttag---------

upper sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 1
AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgt-tagaacggtttgtcttattttgttttgcctgaagttcacttatccattgaaaagtaatgggaagttgttcctggacatttcag
||| || || || || || ||||| || ||||||||||||||||| ||||| ||||| |||||||| || ||  | || ||||| || || || || ||||| |   |   |   || || ||           |   |    | ||||     || |||| |       |   |        |||
AAAAAAAGAAACAGGTTACGTTGGCCTGAAGAACCAAGGAGCTACCTGTTACATGAACTCTCTACTACAGACACTATACCATATACCATACTTCAGGAAGgtgtgagatcatgcatcataattcagagcattctagactattgtttcca----gaactaattgactaacttcattattttacccag

upper sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 5
AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttagaacggt--ttgtcttattttgttttgcctgaagttcacttatccattgaaa-agtaatgggaagttgttcctggacatttcag
 || || || || || | ||| || |||||||| ||||| ||||| ||||||||||||||||| || ||||| || || ||||  || |||||||||||||| | | |  |  ||||  | || |   |           ||| |     |||||  | | || | ||  | ||| | |         
GAAAAAAGAAACAGGTTTTGTAGGTCTTAAGAATCAAGGTGCTACCTGTTATATGAATTCTCTCCTTCAAACGTTATACCATACACCATATTTTAGAAAGgtgaaatcaatcattgttctgttctacatgtttctctaagcacctgaattttgaaccatttattgaaatgttttcatag---------

upper sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 5
AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttag-aacggtttgtcttattt-tgttttgcctgaagttcacttatccattgaaaagt----aatgggaagttgttcctgga-------catttcag
||| ||||| ||||| |||||||| ||||||||||||||||| || ||||| ||||| ||||| ||||||||  | ||||||||||| || |||||||||||||  |||  ||  |||| ||| |   ||| ||    | ||  | | | |  | |  |    || ||| |    ||  | |          ||||||
AAAAAAGGAAACTGGTTATGTTGGACTTAAGAACCAAGGAGCAACTTGTTACATGAACTCTCTCCTCCAAACTCTCTATCATATTCCCTACTTTAGAAAGgttaataaccattgttcttttttctacattgtctctgttacatgtcttcttgaagatatttgaaaagggtaacaattttttggatcatgttttttcag

upper sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 5
AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttagaacggtttgtcttattttgttttgcctgaagttc--acttatccattgaaa---agtaatgggaagtt---gttcctggacatttcag-------
 |||||||| || || | ||||||| | ||||| ||||||||||| || || ||||||||||| ||||| || ||||||||| | ||||| ||  | |||||||      | |   |       |  ||  ||  |||   || | |     | ||   |||    |||   |    |||     |  |||||       
GAAGAAGGAAACAGGATTTGTTGGGTTAAAGAATCAAGGAGCTACATGCTACATGAATTCTCTCCTCCAGACATTGTATCATCTGCCTTACTTCCGGAAGgttattttcctgtcaatacagaaatcatggttgtggttagaaccttttttcagcaactcagtttcaggagtctcggattctctttcggttcagtacttta

upper sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
AAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACGTGTTATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttagaacggtttg---tcttattt-tgttttgcc-tgaagttcacttatccattgaaaagtaatgggaagttgttcctggacatttcag-------------------------------------------------------------------------
|||||||||||| || |  || ||  | |||||||| || |||||||| || |||||||| || || ||||| ||||||||||| ||||| ||  | ||||||  |     ||    | | | |  |||   ||| |  | |||| ||| | ||  |    | |  | | || || |   | | | |  |                                                                         
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgttccagttccttcctctttcactcatgtgcagccatataattcatttagctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314169|gb|GR831798.1|GR831798
EST:     ATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAG                         GCTGTGTACCATATGCCAACAACTGAGAATGATATGCCCACTGGTAGCATC
genomic: ATATGAATTCTCTACTCCAAACCTTGTATCATATTCCTTATTTTAGAAAGgttagaacgg ... gacatttcagGCTGTGTACCATATGCCAACAACTGAGAATGATATGCCCACTGGTAGCATC