1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGATATATCATCACTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttagtttcctagccctgcgcatacagttttttcttcctttttgtttaattattttgtgtaactattgtttgtctcaataatgcatgcag
species | Glycine max |
transcript | GLYMA10G44190.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGCAAAAAAGCAG AGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGEST: gi|58021387|gb|CX708128.1|CX708128
genomic: GTGCAAAAAAGCAGgttagtttcc ... atgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATG
EST: TGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAG AGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGEST: gi|58024474|gb|CX711215.1|CX711215
genomic: TGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttagtttcc ... atgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATG
EST: TGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAG AGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGEST: gi|298189043|gb|HO035680.1|HO035680
genomic: TGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttagtttcc ... atgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATG
EST: TGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAG AGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGEST: gi|23727946|gb|BU762014.1|BU762014
genomic: TGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttagtttcc ... atgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATG
EST: GAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCNNNNNNNGCAG AGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATEST: gi|254346987|gb|GR857191.1|GR857191
genomic: GAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAA-GCAGgttagtttcc ... atgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAAT
EST: TGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAG AGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATG
genomic: TGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttagtttcc ... atgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATATATCATCACTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttagtttcctagccctgcgcatacagttttttcttcctttttgtttaattattttgtgtaactattgtttgtctcaataatgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT