Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattatttttcagtcaatctaatgaggtgttt...

Basic information

species Glycine max
transcript GLYMA10G44110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g38950.2 (Oryza sativa), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattatttttcagt--caatctaatg-aggtgttt--------------------------------------------------
 ||||| |||||||||||||| ||||||||||| ||||||||||||||||| || |||   || |||||| |||| || ||  |||||||||||||||||||   ||   | |||  |       || ||    ||       || | || ||  |||     || |   | | | |  ||   ||||  | |  | |||||                                                   
TTTTCCAGGTCATCCTGCTTTAGACGAGGATGGAAGAAATGCTTTGAGACGTTTGCTTCTAGCTTATGCTAGACACAATCCAGCAGTTGGTTACTGCCAGgtaaatgtgccgttactgg------tgatccgcattgtgtcctttatcttgatggaagtcagcttctttgtaactctgtagcaacaattgattccaagtgttatgataaaatagtttgagtaacaattgtacttggatattggtgaactgtag

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattatttttca--gtcaatctaatgaggtgttt
 || || |||||||| ||  | || |||||||| ||||||||||| ||||| || || || || |||||  |||||||||| |||||||||||||| |||||      |||  | |    | ||   |   | |||||    |  |   ||     ||||  |||    |   ||    |  |  |  | |||  | ||   
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgactcatgtcacttttcttgtcactggattgatgtagcttctttgggaaaccttgcatattgcaagaccaatctgttgc--

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G051050_T01 (Zea mays), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattattt-ttcagtcaatctaatgaggtgttt-
 |||||||||||||||||||| || |||||||| ||||||||||||||||| || ||||  || |||||   ||| ||||| ||||||||||||||||||||   |    |  |||    ||  ||  ||  | ||||      | ||   | |   | |   || |  ||||| | |  ||| | | || | || |  || 
TTTTCCTGGTCATCCTGCTTTAGATGAGGATGGAAGAAATGCTTTGAGACGCTTGCTTATAGCTTATGCGAAACACAACCCATCAGTTGGTTACTGCCAGgtaaatatacccataacacattg-atcctcattatttctttttatcttaccagagtggattgcttatatattatatatatagttagt-tagttagttagtta

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G094951_T01 (Zea mays), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattatttttcagtcaatctaatgaggtgttt---
 |||||||||||||||||||| || |||||||| ||||||||||||||||| || ||||  || |||||   ||| || || ||||||||||||||||||||   |    |  | |    ||   | ||||  || |  |   || | || | ||||||   || ||   |||  | ||    ||   ||   | | | |   
TTTTCCTGGTCATCCTGCTTTAGATGAGGATGGAAGAAATGCTTTGAGACGCTTGCTTATAGCTTATGCGAAACACAATCCATCAGTTGGTTACTGCCAGgtaaatctacccgtcacacatt---tattctcattatgtccttttatcttaacaaaagccaattatttatttagatctccaaaaaggcaaactgatatatatt

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G096470_T02 (Zea mays), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattatttttcagtcaatctaatgaggtgttt-
|||||| || || |||||  | || |||||||| |||||||| || || || || || || || ||||||||||| || ||  |||||||||||||||||||   |   |   | |    |||    |  || |||||    |   |   | | |      | ||    |    || | |||   ||   |  ||| |   
ATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAGgtatatttctaccttagtgcttattgctattacttttcttgtcgaatgaatgtcattagcttgttacgaagcccttataagttt-tcaggtctggtctcat

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttt-tcccaacttttttttataaaagctgttttttccattatttttca-gtcaatctaatgaggtgttt-----------------
||||||||||||||||||| | || || ||||||||||||||| |  | || || |||||||| |||||| | ||||| || || || || ||||| |||||  ||| |   ||||  | |  |||| ||| | || |   | || | |||||  |  |     |  |  ||||   || |  ||||  ||||    | | |                 
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttc--ttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccaacttttttttataaaagctgttttttccattatttttcagtcaatctaatgaggtgttt
||| || |||||||||||| | || ||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||| || || ||||| |||||  |||  |    |     |||  || |  ||| ||   |   ||     ||| |     ||| || ||  |||| |          | |||  |  | 
ATTCCCAGGTCATCCTGCTCTAGATGAGGATGGTAGAAATGCTTTGAGGCGTTTACTTACGGCATATGCTCGACACAACCCCTCTGTAGGGTACTGTCAGgtaattggattggaaggagtttatgtggttaattgtttttatggttggaaaatagagttactttcttgcaaaatttgtgtcatgcataattgatatagta