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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAGgtttgattatggagtgatatcaacaccgattgctttaataaattattaagtcatttttttataagttttgcttctgataaccttttattttccag

Basic information

species Glycine max
transcript GLYMA08G20090.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184366|gb|HO029579.1|HO029579
EST:     ATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAG                         TCATCTCTGCTTCATTCTAGGCCTAAGTCAACGGTGGGAACCCCGGCCTAC
genomic: ATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAGgtttgattat ... tattttccagTCATCTCTGCTTCATTCTAGGCCTAAGTCAACGGTGGGAACCCCGGCCTAC
EST: gi|254336045|gb|GR841370.1|GR841370
EST:     ATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAG                         TCATCTCTGCTTCATTCTAGGCCTAAGTCAACGGTGGGAACCCCGGCCTAC
genomic: ATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAGgtttgattat ... tattttccagTCATCTCTGCTTCATTCTAGGCCTAAGTCAACGGTGGGAACCCCGGCCTAC
EST: gi|254339597|gb|GR848314.1|GR848314
EST:     ATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAG                         TCATCTCTGCTTCATTCTAGGCCTAAGTCAACGGTGGGAACCCCGGCCTAC
genomic: ATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAGgtttgattat ... tattttccagTCATCTCTGCTTCATTCTAGGCCTAAGTCAACGGTGGGAACCCCGGCCTAC
EST: gi|254322662|gb|GR838076.1|GR838076
EST:     ATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAG                         TCATCTCTGCTTCATTCTAGGCCTAAGTCAACGGTGGGAACCCCGGCCTAC
genomic: ATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAGgtttgattat ... tattttccagTCATCTCTGCTTCATTCTAGGCCTAAGTCAACGGTGGGAACCCCGGCCTAC