Sequence
atgc intronic sequence ATGC exonic sequenceCTGCTAAGAGGACAAGGAGAACAACTTACACAGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCCAGTAACACTTACATTGGAAAGCTGAGgtgagtttactgcctgcaagtgttaacatcctctgattactttatctttgactttattgatgaaactcctttttgtttcttcttaaaaaacttaaaatat...
Basic information
species | Glycine max |
transcript | GLYMA08G19520.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G19520.4 (Glycine max), 5'ss of exon 6
lower sequence: AT1G25280.3 (Arabidopsis thaliana), 5'ss of exon 3
CTGCTAAGAGGACAAGGAGAACAACTTACACAGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCCAGTAACACTTACATTGGAAAGCTGAGgtgagtttactg-cctgcaagtgttaacatcct----ctgattactttatctttgactttattgatgaaac--tcctttttgtttcttcttaaa--aaacttaa-aatat-------------------
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CAGCTAAAAGAACTCGTAGAACTACTCGAACCGAGTACATTATCTCCATGGATGCTGATAACATCTCAAGATCCAGCAACTCTTACCTCGGAAAGCTCAGgttcgttttcagtcctagacatagtagtttgctactgttgaatattatggtcgtttatctattgttcaaataatcttttgtgattcccatttaatcaagcttaatgaggtttctttatctctctctcag
upper sequence: GLYMA08G19520.4 (Glycine max), 5'ss of exon 6
lower sequence: AT1G43640.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGCTAAGAGGACAAGGAGAACAACTTACACAGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCCAGTAACACTTACATTGGAAAGCTGAGgtgagtttactgcctgcaagtgttaacatcc-tctgattacttt-atctttgactttatt--gatgaaactcctttttgtttcttcttaaaaaacttaaaatat
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CGGCAAAGCGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCAGACAACATTTCAAGATCAAGCAGCACTTACATTGGCAAACTGAAgtaagaagaagatttaaaaaaaacatcattcgtccacatgttttgagttcttgattaattcagacaaacgtttgtcttacttcattttcag-------------
upper sequence: GLYMA08G19520.4 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0055g00460.t01 (Vitis vinifera), 5'ss of exon 5
CTGCTAAGAGGACAAGGAGAACAACTTACACAGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCCAGTAACACTTACATTGGAAAGCTGAGgtgagtttactgcctgcaagtgtta-acatcctctgattactttatctttgactttattgatgaaactcctttttgtttcttcttaaaaaacttaaaatat
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CTGCAAAAAGGAATCGCCGGACAACTTGCACAGAGTATGTTATCTCCATGGATGCTGAGAACATTTCAAGGTCAAGCAGCACTTACATTGGAAAACTGAGgtaatacaattatatgcgaacataacaaatccttgacttcctctctgttatattgtatttacctttatcgggtacatggtccatggcacttctaggaata-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193368378|gb|FK337516.1|FK337516EST: GATGCTGACAACATCTCTAGATCCAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAGATTCATTATATGCGATACACAGCCTCCATA
genomic: GATGCTGACAACATCTCTAGATCCAGTAACACTTACATTGGAAAGCTGAGgtgagtttac ... cattcaccagATCAAATTTTCTTGGTACAAGATTCATTATATGCGATACACAGCCTCCATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCTAAGAGGACAAGGAGAACAACTTACACAGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCCAGTAACACTTACATTGGAAAGCTGAGgtgagtttactgcctgcaagtgttaacatcctctgattactttatctttgactttattgatgaaactcctttttgtttcttcttaaaaaacttaaaatat
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA