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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACAATGTCAGAGTTCCTGCACCCTCCTCATCCTTGTCACCTATCCCAGGTGCTCGTGTTGGACCAGCAACATTAGGTCCTTCAAAATTAATGTACAGgtataactggttaaattcatgaaaatgatgaaatgaagatatatttatttaatttagtcattaacttgattactgttgaag

Basic information

species Glycine max
transcript GLYMA08G04180.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343908|gb|CO984641.1|CO984641
EST:     CGTGTTGGACCAGCAACATTAGGTNNNTCAAAATTAATGTACAG                         GTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTC
genomic: CGTGTTGGACCAGCAACATTAGGTCCTTCAAAATTAATGTACAGgtataactgg ... actgttgaagGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTC
EST: gi|16996893|gb|BM086265.1|BM086265
EST:     GGTGCTCGTGTTGGACCAGCAACATTAGGTCCTTCAAAATTAATGTACAG                         GTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTC
genomic: GGTGCTCGTGTTGGACCAGCAACATTAGGTCCTTCAAAATTAATGTACAGgtataactgg ... actgttgaagGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTC