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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggcattctactttttccttaagttatgacattaattattggccactaatttcatgttacaatttagttgctgatttgaaaatctctttcatttaattgtgcag

Basic information

species Glycine max
transcript GLYMA04G39520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39520.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G09900.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggcattctactttttccttaagttatgacattaattattggccactaatttcatgttacaatttagttgctgatttgaaaatctctttcatttaattgtgcag
||||| || |||||||| ||||| |||||||||||||| ||||| || ||||||||||||  |||  || |      |  ||| |||   |  ||||| ||| ||   |  ||||   || || | |  |  ||       |||    | |  |  || | |  ||
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAgta--aggacttgtg-----tagttacgttgcaa--ttaataatttgctggtgttttc---tttcattgtgataactatc----aaactattgtggtcaaactttaaag

upper sequence: GLYMA04G39520.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgta---ctaggcattctacttt----ttccttaagttatgacattaattattggccactaatttcatgttacaatt-tagttgctgatttgaaaatctctttcatttaattgtgcag
||||| || |||||||| ||||| |||||||||||||| || ||||||||||||||||||   ||     || |  |||    || |||||| | ||   ||  |  || |    |  ||  |||||   ||| || ||  || | || |||  |||                 
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagactttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag-------------

upper sequence: GLYMA04G39520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
GTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggcattctacttt----ttccttaagtta----tgacattaatt-----attggccactaatttcatgttacaatttagttg---ctgatttgaaaatctctttcat--ttaattgtgcag----------------------------------
|||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||||||  |  ||  |  ||     ||| || | |||    |  |||| |||     ||||  |  | | ||  |  ||| ||||| | |   || |||| |   |    ||||   || ||  |||                                    
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag

upper sequence: GLYMA04G39520.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S257_89V6.2 (Physcomitrella patens), 5'ss of exon 5
GTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggcattctactttttcc-ttaagttatgacattaattat-----tggcc--actaat-ttcatgttacaattt---agttgctgatttgaaaatct--ctttcatttaattgtg--cag-------------------------
||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||       || ||  ||| |  |   ||| |  ||   | | |     |||    | || | ||  | ||  | ||    || ||    || |||  |||  |  | ||||  ||     |||                         
GTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAgtaaggatttttttatatttgcaatcctgttttaccagctactttgcgtttggtttaaatagtatttgtattgaagttcttgagctggcacttcgaagttcttaccgttattttgttagagccagtactgatagtagggtggtgtgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208233022|gb|GE032775.1|GE032775
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCG
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCG
EST: gi|193411717|gb|FK381652.1|FK381652
EST:     TTTTGGTGCCATGGCTAAAACTTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: TTTTGGTGCCATGGCTAAAAC-TGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|193430352|gb|FK397288.1|FK397288
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|20812745|gb|BQ297231.1|BQ297231
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|207771711|gb|GD742486.1|GD742486
EST:     TTTTGGTGCCATGGCTAAAACTGAAGAAAATCGCAT-CATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: TTTTGGTGCCATGGCTAAAACTGA-GAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|193702744|gb|FK639176.1|FK639176
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|15284713|gb|BI468604.1|BI468604
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|193364691|gb|FK330120.1|FK330120
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|193530760|gb|FK484523.1|FK484523
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|193328951|gb|FK295195.1|FK295195
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|193426023|gb|FK390800.1|FK390800
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|192297411|gb|FG990689.1|FG990689
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|7478704|gb|AW666372.1|AW666372
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|193627757|gb|FK577939.1|FK577939
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTCGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|208038643|gb|GD834543.1|GD834543
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|207725740|gb|GD700972.1|GD700972
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|7478560|gb|AW666314.1|AW666314
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATAGCTCTC
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATA-CTCTC
EST: gi|193412299|gb|FK381226.1|FK381226
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|11274759|gb|BF325094.1|BF325094
EST:     CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAA                         GTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggca ... aattgtgcagGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA