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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctttttttgttgttgttgatttggaagggtattccagtattcccacttaaatatatgaattttaattggaagggtccttttcattgcag

Basic information

species Glycine max
transcript GLYMA17G00910.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 3
TTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctttt-tttgttgttgttgatttggaagggtattccagtattcccacttaaatatatgaattttaattggaagggtccttttcattgcag-----------
|| ||||| ||||| || |||||||| || || ||||| || || || |  || ||  | ||||| ||||||||||| |||||||| ||||||||||||||||  |||| || | ||| |      ||      | ||  || | |||      |  |  |||| |  |  || || | |  |  |  |  |||              
TTGGGGCAAGCTCCGGCAAGACAGGCGGCGTTGGGTGCGGGCATACCGAATTCAGTGGTGTGCACCACTATTAACAAAGTCTGTGCTTCAGGGATGAAAGgtagattctattatctgtgggaaactataaatttgagttgtcaattatcatatgtggacaatatta--tcaaagtgtatgacttgtcctttttgtcttcttgatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587273|gb|DB965935.1|DB965935
EST:     ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAG                         CTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
genomic: ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctt ... ttcattgcagCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
EST: gi|18730350|gb|BM525828.1|BM525828
EST:     ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAG                         CTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
genomic: ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctt ... ttcattgcagCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
EST: gi|9986219|gb|BE660327.1|BE660327
EST:     ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAG                         CTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
genomic: ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctt ... ttcattgcagCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
EST: gi|298194892|gb|HO043364.1|HO043364
EST:     ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAG                         CTACCATGCTTGCGGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
genomic: ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctt ... ttcattgcagCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
EST: gi|192294916|gb|FG986639.1|FG986639
EST:     ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAG                         CTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
genomic: ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctt ... ttcattgcagCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
EST: gi|213613699|gb|DB963345.1|DB963345
EST:     ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAG                         CTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
genomic: ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctt ... ttcattgcagCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
EST: gi|19452347|gb|BM953757.1|BM953757
EST:     ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAG                         CTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
genomic: ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctt ... ttcattgcagCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
EST: gi|14259973|gb|BG882881.1|BG882881
EST:     ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCANGGATGAAAG                         CTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG
genomic: ATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGgtatgttctt ... ttcattgcagCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTG