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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagatcttctctattggaatataacatggagacgattttatatctcaattcatagttatttacctgtcatttcacatctatcattccttttgcattcaatatttgattttggaaaattcccatag

Basic information

species Glycine max
transcript GLYMA10G01820.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01820.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g23740.2 (Oryza sativa), 5'ss of exon 3
GTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgagg--agatcttctctattggaatataacatggagacgattttatatctcaattcatagttatttacctgtcatttcacatctatcattccttttgcattcaatatttgattttggaaaattcccatag
||||| || |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||| || ||  |||||||||||||    ||    | | ||  ||||     || | |    | || | |  |   || | || || |    | || ||||  | | |||                                         
GTTGATTGCGATGAGCACAAGAGTGTGTGCAGCAAGTATGGAGTTTCTGGGTACCCAACAATTCAATGGTTCCCCAAAGGATCCCTGGAGCCCAAAAAgtgaggctgcataacttttgttcaaatacttt-tgaaca----tctacaccaga---caaaatt-ttcatgatttatatcactacaaccatgtag-------------------------------------

upper sequence: GLYMA10G01820.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 5'ss of exon 3
GTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagatcttctctattg--gaatataacatggagacgattttatatctcaattcatagttatttacctgtcatttcacatctatcattccttttgcattcaatatttgattttggaaaattcccatag
||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| || ||||| || ||||| ||  | ||  |||| ||||||| | |  | ||   |||  || ||    ||    || ||||| | ||  ||   | | | |        | || | | |  ||   ||                                        
GTTGACTGTGATGAGCACAAGAGTGTGTGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatacatgcttctttgttgattactcaatcactac-attttctgtcgtaaagaacaatgaccc-----taatgttaaacttactgtttag-------------------------------------

upper sequence: GLYMA10G01820.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G159369_T01 (Zea mays), 5'ss of exon 3
GTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagatcttctctattggaatataacatggagacgattttatatctcaattcatagttatttacctgtcatttcacatctatcattccttttgcattcaatatttgattttggaaaattcccatag
||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| || || ||  | || ||||||| |  || |  ||  ||   | ||   |  |||  ||||| |||    ||  ||| |  |  | ||    ||   ||                                                 
GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAAgtgagaat-tcataacttctgttttgtactttccaga-aattttttattgtgataaataatgttaaatctactcttgtgcag------------------------------------------------

upper sequence: GLYMA10G01820.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G128171_T04 (Zea mays), 5'ss of exon 3
GTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagatcttctctattggaatataacatggagacgattttatatctcaattcatagttatttacctgtcatttcacatctatcattccttttgcattcaatatttgattttggaaaattcccatag
||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| || ||||| || ||||||||  | ||  |||||||||||||          | ||  |||               ||||  || ||  ||  |    |  |  |||| | |||  |   |  |||||||| |||    |                          
GTTGATTGTGATGAGCACAAGAGTTTGTGCAGCAAGTATGGAGTTTCCGGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagcgcg---tgtttaaat---------------ttttccatatcctttgtttaccaagt-tctgtgaattctgacagaa-attcctttggcaaattag-------------------------

upper sequence: GLYMA10G01820.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G47470.3 (Arabidopsis thaliana), 5'ss of exon 3
GTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagatcttctctattggaatataacatggagacgattttatatctcaattcatagttatttacctgtcatttcacatctatcattccttttgcattcaatatttgattttggaaaattcccatag
||||| ||||||||||| |||||| | || |  || ||||| ||   ||| |||||||| |||||||||||||| ||||||||||||||| |  ||||||      ||  | | || ||     |  |    ||  ||||   |||     ||  | | | | |     | ||      |  || |||   ||||  ||   | ||  || ||    |||        
GTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgt------atgctttttactgtttattctctctaagcagattacttat-----ttggtggatgtcttttgtttatagatagtgaatgattttgtttgttttttctgttc-atcttattgaatag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685788|gb|AW756436.1|AW756436
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|193457688|gb|FK424980.1|FK424980
EST:     GGGTACCCAACAATTCAGTGGTTTCTAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|16347802|gb|BI973397.1|BI973397
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|209718584|gb|BW674723.1|BW674723
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|308098808|gb|HO760649.1|HO760649
EST:     ACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: ACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|213613771|gb|DB961268.1|DB961268
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|208290284|gb|GE082292.1|GE082292
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCAACTTGTTGAGTTTGTAAA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCA-CTTGTTGAGTTTGTAAA
EST: gi|193391542|gb|FK356119.1|FK356119
EST:     GGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGACCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGG
genomic: GGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAG-CCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGG
EST: gi|208278564|gb|GE076243.1|GE076243
EST:     AATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: AATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|193377114|gb|FK342751.1|FK342751
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|208296783|gb|GE095693.1|GE095693
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGACCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|208279072|gb|GE077535.1|GE077535
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAAATACGG
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAA-TACGG
EST: gi|209701913|gb|BW664567.1|BW664567
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|193316002|gb|FK280724.1|FK280724
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|213596787|gb|DB964078.1|DB964078
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|298194838|gb|HO043310.1|HO043310
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|298198107|gb|HO039646.1|HO039646
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|298167695|gb|HO012958.1|HO012958
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|193588046|gb|FK539189.1|FK539189
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|208191744|gb|GD991062.1|GD991062
EST:     GTACCCAACAATTCAGTTGGTTTACCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GTACCCAACAATTCAG-TGGTTT-CCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|208106673|gb|GD905622.1|GD905622
EST:     TTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: TTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|193717561|gb|FK650341.1|FK650341
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|22540736|gb|BU090579.1|BU090579
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|208306351|gb|GE104430.1|GE104430
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTT-GTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|193499450|gb|FK460363.1|FK460363
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|298163482|gb|HO012215.1|HO012215
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|208060889|gb|GD858799.1|GD858799
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAAATACAACTTGTTGAGTTTGTAAA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAA-T-CA-CTTGTTGAGTTTGTAAA
EST: gi|151396040|gb|EV265917.1|EV265917
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGAACTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|193670121|gb|FK613183.1|FK613183
EST:     GGGTACCCAACAATTCAGTGGTTTCTAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|213587217|gb|DB965921.1|DB965921
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|151397387|gb|EV267260.1|EV267260
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAACCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|208143785|gb|GD942886.1|GD942886
EST:     ATCTCTTG-AG-C-AAAA                         GTATGGAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: ATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|207783866|gb|GD756846.1|GD756846
EST:     TTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: TTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|6746823|gb|AW317279.1|AW317279
EST:     TGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: TGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|151406560|gb|EV276375.1|EV276375
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|193415139|gb|FK378405.1|FK378405
EST:     ATCTCTTGAAGTCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGG
genomic: ATCTCTTGAAG-CCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGG
EST: gi|298195370|gb|HO039201.1|HO039201
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
EST: gi|209711953|gb|BW679032.1|BW679032
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGAATCACTTGTTGAGTTTGTAAATACGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagatcttctctattggaatataacatggagacgattttatatctcaattcatagttatttacctgtcatttcacatctatcattccttttgcattcaatatttgattttggaaaattcccatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC