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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaataattatattgagtgtggattgtttctgctggtaatttgttttttttttttttgtttcctttgtgattattttctttggaattttcattcttttgtag

Basic information

species Glycine max
transcript GLYMA08G20090.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184366|gb|HO029579.1|HO029579
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
EST: gi|254336045|gb|GR841370.1|GR841370
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
EST: gi|254339597|gb|GR848314.1|GR848314
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
EST: gi|298175987|gb|HO015392.1|HO015392
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
EST: gi|254322662|gb|GR838076.1|GR838076
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaataattatattgagtgtggattgtttctgctggtaatttgttttttttttttttgtttcctttgtgattattttctttggaattttcattcttttgtag

- - - - - - - -  GCAGCT
- - - - - - - - - CAGCTC
- - - - - - - - -  AGCTCA