Sequence
atgc intronic sequence ATGC exonic sequenceGTGAAGTGGAACTTGTGGGTTGCCCACAAGCTGTTGCTTACCCTTGTTTATGGTTTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCTGgtaagttagttgcctggattgttatattgcatctttaattagctttatgataccataatttctcttccccttttttacag
Basic information
species | Glycine max |
transcript | GLYMA20G37380.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G37380.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g54920.1 (Oryza sativa), 5'ss of exon 3
GTGAAGTGGAACTTGTGGGTTGCCCACAAGCTGTTGCTTACCCTTGTTTATGGTTTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCTGgtaagttagttgc---ctggattgttatattgcatctttaattagc---tttatgataccataat-----ttctcttccccttttttacag
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GGGAAGTGGGGCCTATGGTTTCTACACAAATTGGTGCTTACTGGTGTCTATGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGgtaa-ttggttacaatttacagcacagttatgtttgtttaggttgtgtgtttgctgttccataatcagcattttttattattttgttgcag
upper sequence: GLYMA20G37380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g00750.t01 (Vitis vinifera), 5'ss of exon 3
GTGAAGTGGAACTTGTGGGTTGCCCACAAGCTGTTGCTTACCCTTGTTTATGGTTTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCTGgtaagttagttgcctggat-tgttatattgcatctttaattagctttat---gataccataat------------------ttctcttccccttttttacag
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GTGAAATGGGGCTTGTGGGTTGTCCACAAACTAGTGCTTACTGCTGTTTATGGCTTCATATTGTTCATGTACCACTCAAAATGGAGAGAGAGGTTACCTGgtgagattgtctaatatatgccttgtctttgaagttgaatttgcctcatattgaagacctaatcactaaatttaagtctgtttcttctttcctttgatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213610385|gb|DB984221.1|DB984221EST: TGGTTTCATATTGTTCATGTATCATTCTAGGAAAAGAGAAAGGTTACCTG CAAGGCCTGCATACTACAAGTATGTTACTATTATGCTCATCTTGAATGCAA
genomic: TGGTTTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCTGgtaagttagt ... ttttttacagCAAGGCCTGCATACTACAAGTATGTTACTATTATGCTCATCTTGAATGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAAGTGGAACTTGTGGGTTGCCCACAAGCTGTTGCTTACCCTTGTTTATGGTTTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCTGgtaagttagttgcctggattgttatattgcatctttaattagctttatgataccataatttctcttccccttttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA