Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttatactaatgtctcatcataatggctttgaattaactttccttctactcaatataaatgaatatatgttgagaaatatcaacaatatgcaaaag...

Basic information

species Glycine max
transcript GLYMA20G28860.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28860.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g04080.t01 (Vitis vinifera), 5'ss of exon 3
AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttatactaatgtctcatcataatggctttgaattaactttccttctactc----aatataaa---tgaatatatgttgagaaatatcaacaa-tatgcaaaag---------------------------------
|||||||||| || ||||||  | |||||||||||||| ||||||  |||   ||  ||||||||||||||||||  ||||| ||| |||||||||||||| |    | |  ||  |   | |       |   || | | || | | ||    | | |      ||||| |||         |||    || | || | ||                                  
AACTTGGAGTGCTCAGCTGGCGATTAGATGCTGATAACTATGAAACAGATGAGGAATTGAAGAAGATTCGTGAAGCCCGTGGATACTCCTACATGgtttgtcacctaacttacttttttcattcagaaaaaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataatataagtggaaatggatgtaaacattttctccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888471|gb|BQ741684.1|BQ741684
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|213611023|gb|DB970950.1|DB970950
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|16995955|gb|BM085327.1|BM085327
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|7283499|gb|AW596106.1|AW596106
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|21479899|gb|BQ576582.1|BQ576582
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|254333158|gb|GR850408.1|GR850408
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298198321|gb|HO039860.1|HO039860
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|13477757|gb|BG507506.1|BG507506
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|37994412|gb|CF806158.1|CF806158
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|7693449|gb|AW761541.1|AW761541
EST:     GTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: GTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|19053712|gb|BM732379.1|BM732379
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAGATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|37995680|gb|CF807269.1|CF807269
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298196159|gb|HO044550.1|HO044550
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|213617570|gb|DB969282.1|DB969282
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|209728725|gb|BW655418.1|BW655418
EST:     GATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: GATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|192312869|gb|FK005453.1|FK005453
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACGTG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|192312868|gb|FK005452.1|FK005452
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACGTG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|120492785|gb|EH220952.1|EH220952
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193565451|gb|FK527244.1|FK527244
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298182107|gb|HO026282.1|HO026282
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GGTGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|209704933|gb|BW661723.1|BW661723
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|151396296|gb|EV266173.1|EV266173
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193470005|gb|FK436786.1|FK436786
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAA
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAA
EST: gi|209728724|gb|BW655417.1|BW655417
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|120492659|gb|EH220826.1|EH220826
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193608303|gb|FK555284.1|FK555284
EST:     AGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: AGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298189869|gb|HO038272.1|HO038272
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|13252127|gb|BG363030.1|BG363030
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|26060181|gb|CA803095.1|CA803095
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|120492941|gb|EH221108.1|EH221108
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|22522689|gb|BU081500.1|BU081500
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|24136099|gb|BU926609.1|BU926609
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|21887607|gb|BQ740820.1|BQ740820
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193572267|gb|FK530012.1|FK530012
EST:     TAGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: T-GATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|21257093|gb|BQ453981.1|BQ453981
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298175141|gb|HO014944.1|HO014944
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGTCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298184335|gb|HO029548.1|HO029548
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298170432|gb|HO019056.1|HO019056
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298189141|gb|HO037544.1|HO037544
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|192297717|gb|FG989952.1|FG989952
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCGAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|26059241|gb|CA802155.1|CA802155
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298179497|gb|HO027968.1|HO027968
EST:     ATGATCCAGAGCTAAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|151396844|gb|EV266717.1|EV266717
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193566133|gb|FK524608.1|FK524608
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298184623|gb|HO029836.1|HO029836
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|12689395|gb|BG155792.1|BG155792
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAATTGCCAA-TTATGAACAGAAAAAT
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAA-T
EST: gi|254338222|gb|GR849747.1|GR849747
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|19052601|gb|BM731268.1|BM731268
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|209706331|gb|BW680691.1|BW680691
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|192294801|gb|FG987490.1|FG987490
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|6963527|gb|AW432220.1|AW432220
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|6719759|gb|AW307406.1|AW307406
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|213601717|gb|DB972425.1|DB972425
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|7233975|gb|AW569317.1|AW569317
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|254332911|gb|GR850161.1|GR850161
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|11413256|gb|BF425267.1|BF425267
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAAAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|254326218|gb|GR840810.1|GR840810
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|26058060|gb|CA800974.1|CA800974
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298181742|gb|HO025917.1|HO025917
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|254336203|gb|GR842382.1|GR842382
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|207758686|gb|GD728732.1|GD728732
EST:     GATCCAGAGCTGAAGAAGATTCGTGAAAGAAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTG
genomic: GATCCAGAGCTGAAGAAGATTCGTGAA-GA-GCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTG
EST: gi|7925120|gb|AW831146.1|AW831146
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|209706869|gb|BW683209.1|BW683209
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|4295457|gb|AI442336.1|AI442336
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|254324010|gb|GR836242.1|GR836242
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|254336202|gb|GR842381.1|GR842381
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|11413845|gb|BF425856.1|BF425856
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|15813927|gb|BI786202.1|BI786202
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|254323704|gb|GR836043.1|GR836043
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|10238192|gb|BE807080.1|BE807080
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|207705544|gb|GD689438.1|GD689438
EST:     ATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTT
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTT
EST: gi|8827472|gb|BE211202.1|BE211202
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193570260|gb|FK525331.1|FK525331
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193701216|gb|FK638661.1|FK638661
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|208168596|gb|GD968698.1|GD968698
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|151408479|gb|EV278287.1|EV278287
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|8827270|gb|BE211000.1|BE211000
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|9898912|gb|BE607880.1|BE607880
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|23052890|gb|BU577381.1|BU577381
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttatactaatgtctcatcataatggctttgaattaactttccttctactcaatataaatgaatatatgttgagaaatatcaacaatatgcaaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA