1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTTTCTTGATCAAACCAGCTATCACTCTCGGAGCTTTCTCAGTGTCTGCTTTCACTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAGgtaaatttgcttattctttatctttatcgcattcatctatgataacaataaactgttgagttcttggttcttgagataggaatttgattggcatgttcaa...
species | Glycine max |
transcript | GLYMA20G28500.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAG GGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACCAAGGGATGCTGTTEST: gi|6747168|gb|AW317624.1|AW317624
genomic: CTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAGgtaaatttgc ... tgtgttgcagGGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACCAAGGGATGCTGTT
EST: TTTCACTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAG GGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACCAAGGGATGCTGTTEST: gi|192298444|gb|FG988460.1|FG988460
genomic: TTTCACTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAGgtaaatttgc ... tgtgttgcagGGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACCAAGGGATGCTGTT
EST: TTTCACTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAG GGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACEST: gi|9819693|gb|BE555206.1|BE555206
genomic: TTTCACTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAGgtaaatttgc ... tgtgttgcagGGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTAC
EST: GACATCTACATGTACAG GGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACCAAGGGATGCTGTTEST: gi|6747212|gb|AW317668.1|AW317668
genomic: GACATCTACATGTACAGgtaaatttgc ... tgtgttgcagGGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACCAAGGGATGCTGTT
EST: TTTCACTGCAACAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAG GGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACCAAGGGATGCTGTT
genomic: TTTCACTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAGgtaaatttgc ... tgtgttgcagGGGTGAGAGAGCATTTTGCAGCAATGAATGCCGGTACCAAGGGATGCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTCTTGATCAAACCAGCTATCACTCTCGGAGCTTTCTCAGTGTCTGCTTTCACTGCAAGAAAAATCTTGGGCAGGGTAAAGACATCTACATGTACAGgtaaatttgcttattctttatctttatcgcattcatctatgataacaataaactgttgagttcttggttcttgagataggaatttgattggcatgttcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA