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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCTgtaagatttttgtatagattgtttggttgtttgcattttcttgagacactcttattgagatgcagtcactgtgtgcag

Basic information

species Glycine max
transcript GLYMA17G01650.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426553|gb|CA938073.1|CA938073
EST:     GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCT                         GTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
genomic: GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCTgtaagatttt ... ctgtgtgcagGTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
EST: gi|298173214|gb|HO020198.1|HO020198
EST:     GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCT                         GTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
genomic: GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCTgtaagatttt ... ctgtgtgcagGTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
EST: gi|207752825|gb|GD724663.1|GD724663
EST:     GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCT                         GTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
genomic: GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCTgtaagatttt ... ctgtgtgcagGTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
EST: gi|16276100|gb|BI941679.1|BI941679
EST:     GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCT                         GTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
genomic: GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCTgtaagatttt ... ctgtgtgcagGTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
EST: gi|151395677|gb|EV265554.1|EV265554
EST:     GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCT                         GTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
genomic: GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCTgtaagatttt ... ctgtgtgcagGTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
EST: gi|207715674|gb|GD697474.1|GD697474
EST:     GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCT                         GTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATACGAATAAGA
genomic: GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCTgtaagatttt ... ctgtgtgcagGTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACAT-CGA-TAAGA
EST: gi|192300085|gb|FG991875.1|FG991875
EST:     GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCT                         GTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
genomic: GACAGGCTGAGTCTGCTCGCATTAGAGACAAGTATCCTGATAGAATACCTgtaagatttt ... ctgtgtgcagGTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCAGACATCGATAAGAAG
EST: gi|16280358|gb|BI943920.1|BI943920
EST:     AGAGACAAGTATCCTGATAGAATACCT                         GTGATTGTTGAGAAAGCGGAAAGAAGTGACAT-CCANGACATCGATAAGAA
genomic: AGAGACAAGTATCCTGATAGAATACCTgtaagatttt ... ctgtgtgcagGTGATTGTTGAGAAAGCGGAAAGAAGTGACATCCCA-GACATCGATAAGAA