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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcaccattactaagctattttcctgtttctttcttaaaaggatcagtcagcaaatatttatggaaaattcttgctcatctgcag

Basic information

species Glycine max
transcript GLYMA17G00910.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587273|gb|DB965935.1|DB965935
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|18730350|gb|BM525828.1|BM525828
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|9986219|gb|BE660327.1|BE660327
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|298194892|gb|HO043364.1|HO043364
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCCCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|192294916|gb|FG986639.1|FG986639
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAACGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|213613699|gb|DB963345.1|DB963345
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|19452347|gb|BM953757.1|BM953757
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|207748253|gb|GD719922.1|GD719922
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|14259973|gb|BG882881.1|BG882881
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTTCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT