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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATGAAATGTGTGATGCTGCGGCTGTTTTCCACAGTCACGGAATAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtatttgtacgtggatgattttttgttttcaaatcttttggagtcttgagattaaagacacactttcaaaaattataatacataattattagttgt...

Basic information

species Glycine max
transcript GLYMA13G35120.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039935|gb|BM308229.1|BM308229
EST:     TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA                         ATCACTCACATGGAAATGATAAAAGGAATCAAG
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAG
EST: gi|209713814|gb|BW684006.1|BW684006
EST:     TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA                         ATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGAT
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGAT
EST: gi|209717225|gb|BW657694.1|BW657694
EST:     TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA                         ATCACTCACATGGAAATGATAAAAG
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATGATAAAAG
EST: gi|298191951|gb|HO036033.1|HO036033
EST:     TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA                         ATCACTCACATGGAAATG
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATG
EST: gi|298190687|gb|HO032808.1|HO032808
EST:     TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA                         ATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGAT
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGCTATTATGAT
EST: gi|209700267|gb|BW664493.1|BW664493
EST:     TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGA                         ATCACTCACATGGAAAT
genomic: TAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtattt ... caaatggcagATCACTCACATGGAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATATGAAATGTGTGATGCTGCGGCTGTTTTCCACAGTCACGGAATAGAGTCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAgtaagtatttgtacgtggatgattttttgttttcaaatcttttggagtcttgagattaaagacacactttcaaaaattataatacataattattagttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG