Sequence
atgc intronic sequence ATGC exonic sequenceATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttcattactttttcatagcagattgcttcacttttattaaccaaactattacatttatgtggtgataacaatgatagttgatgttatgggttgaagcaacaccctgattgtttgctcctttcgcttttcag
Basic information
species | Glycine max |
transcript | GLYMA08G19520.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G19520.4 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G046816_T04 (Zea mays), 5'ss of exon 2
ATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttcattactttttcatagcagattgcttcacttttattaacca---aactattacatttatgtggtg-ataacaatgata-gttgatgttatg-ggttgaagcaacaccctgattgtttgctcctttcgcttttcag
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TTGTGCAGCTGTCTGCAGAACATGGAGAGAGATGTGTAGAGAGATTGTCAAGAGCCCAGAGTTTTCTGGAAAAATCACTTTTCCTGTTTCCTTGAAGCAGgt-aatcatgcagctatgttataccttatta-tccatatatactgattccgttaccgttgtcaatactccatgtacagtattggtatgccaatcatatttggataatctaataagctcatgctgttcctcttctg-tctacag
upper sequence: GLYMA08G19520.4 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0055g00460.t01 (Vitis vinifera), 5'ss of exon 3
ATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttcattactttttcatagcagattgcttcacttttattaaccaaactattacatttatgtggtgataacaatgatagttgatgttatgggttgaagcaacaccctgattgtttgctcctttcgcttttcag
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ATGCGCTGCTGTTTGCCGGTCATGGAGGACTATGTGTAAAGAAATTGTTAGAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAGgtaggatccatttgctctgctttat---ttgttttttttttttccggttccgtaatgaagttacg-ggcaacaaatacta-aattctttccatttgtattttcag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193575447|gb|FK527996.1|FK527996EST: TCCCTGTGTCCTTGAAGCAG CCTGGGGCCACGGGGANGGAANCATTCAATGTTTTATCAAAAGAGATAAAT
genomic: TCCCTGTGTCCTTGAAGCAGgttaggttca ... cgcttttcagCCT-GGGCCAC-GGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGgttaggttcattactttttcatagcagattgcttcacttttattaaccaaactattacatttatgtggtgataacaatgatagttgatgttatgggttgaagcaacaccctgattgtttgctcctttcgcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC