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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCAACACCTAACAAAAGAGGATTTGAGCAAGCTATTCTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgcttttattgtcattttctttcaccaacatcacctatttattcttcaaagttcatccgagttatgaaactccatcttgtattactttaatttcattattgaatgtttgtgttatgagctcagagtttcttagggataccatgcataataacactttcttgattgagactttcag

Basic information

species Glycine max
transcript GLYMA07G39190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39190.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0116g01540.t01 (Vitis vinifera), 5'ss of exon 2
TTCTTCAACACCTAACAAAAGAGGATTTGAGCAAGCTATTCTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgcttttattgtcattttctttcaccaacatcacctatttattcttcaaagttcatccgagttatgaaactccatcttgt-attactttaatttcattattgaatgtttgtgttatgagctcagagtttcttagggataccatgcataataacactttcttgattgagactttcag
||||||||||||| |||||||||||||| |||||| |||| |||||||||||||   | ||||| ||||| ||  ||   |||||||| ||  |||||||||||  ||||  | |  |||| |||| |   | || | | |   |||  | |  || |    | | |||   ||   |   |  |     || ||| | ||                                                                              
TTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGTTATTTTTTGGGGAGTTCCAAATCTTGGATATCAACGGAGCAACCTGCTTTCTCACTAGGACAGGgtatagttttccttttctttt-tttccctttcttctcatttcctttccactagtttaaaaataataatgggtctgggttgagggacctgattgattgcctt------------------------------------------------------------------------------

upper sequence: GLYMA07G39190.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S91_92V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCTTCAACACCTAACAAAAGAGGATTTGAGCAAGCTATTCTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgcttttattgtcattttctttcaccaacatcacctatttattcttcaaagttcatccgagttatgaaactccatcttgtattactttaatttcattattgaatgtttgtgttatgagctcagagtttcttagggataccatgcataataacactttcttgattgagactttcag
|||| ||| | || || || |||||| | |||||| | |  ||  | || |||    |  | ||||||||||||||  ||||||| |||||||| ||||||||||   | |     |   || |  | |  | |    |  | |       ||||||      ||||       | || ||  |  |    | ||||||| ||| |    | || | | |                                                          
TTCTGCAAAAACTCACCAAGGAGGATCTCAGCAAGATGTATTTCAGTGACTTCAAGATTATTGACATCAATGGCTCCGAGTGCTTCCTTACCCGCACAGGgtatgtcctca-----acactcctagaactgcgttgagtgctca------gaagttct-----gttacttcgtccaattttagacgagcaca-tttcatttttgcag---tatgctgtaa----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7639639|gb|AW733958.1|AW733958
EST:     TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGG                         GTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
genomic: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgctttt ... agactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
EST: gi|8669136|gb|BE190243.1|BE190243
EST:     TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGG                         GTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
genomic: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgctttt ... agactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
EST: gi|10238324|gb|BE807140.1|BE807140
EST:     TTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTTCTTACCCGGACAGGgtatgctttt ... agactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
EST: gi|6134775|gb|AW133168.1|AW133168
EST:     TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGG                         GTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
genomic: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgctttt ... agactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT