Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGTCTCATTGGCTCTGAATCGGCCGAAGCTTCAGGCTCTTACTAATAAGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcgacattatataaaccctctatacaacaatcttatggtatttccgttgcctgttcagttctttaagttgctgcactgaatattgcag

Basic information

species Glycine max
transcript GLYMA20G36330.1
intron # 27
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7042366|gb|AW472260.1|AW472260
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|208295580|gb|GE092725.1|GE092725
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTT
EST: gi|254319444|gb|GR830695.1|GR830695
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|22931219|gb|BU548358.1|BU548358
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|58021183|gb|CX707925.1|CX707925
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|58020967|gb|CX707709.1|CX707709
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|14206129|gb|BG839807.1|BG839807
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|58014295|gb|CX701037.1|CX701037
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
EST: gi|18039692|gb|BM307986.1|BM307986
EST:     AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGG                         GTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT
genomic: AGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcga ... aatattgcagGTGAGGAATCTTGAGAGATCATATTTTAAAATGTGGAATCTGCATTGCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAGTCTCATTGGCTCTGAATCGGCCGAAGCTTCAGGCTCTTACTAATAAGCTTAAAGCTGTACGCATGACTTGCCCTCTATTTGACACGGCCCGTTGGgtgagttcgacattatataaaccctctatacaacaatcttatggtatttccgttgcctgttcagttctttaagttgctgcactgaatattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG