1 5' 3' | 2 5' 3' | 3 5' 3' |
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata...
species | Glycine max |
transcript | GLYMA20G37190.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|15337472|gb|BI498128.1|BI498128
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|193647660|gb|FK593573.1|FK593573
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATACAAAGGAAGCAAATGAAEST: gi|13480907|gb|BG510250.1|BG510250
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAAT-CAA-GGAAGCAAATGAA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|193377428|gb|FK338810.1|FK338810
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|208106456|gb|GD905573.1|GD905573
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATAEST: gi|31470717|gb|CD412745.1|CD412745
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|193696996|gb|FK635310.1|FK635310
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: GTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|209703211|gb|BW673345.1|BW673345
genomic: GTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|7146365|gb|AW508287.1|AW508287
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|13791434|gb|BG654025.1|BG654025
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: GTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|7924600|gb|AW830626.1|AW830626
genomic: GTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|193325398|gb|FK291830.1|FK291830
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: TTCAGTTGAGAATGCCAAGTAAGTACGAGCCTAAGTACAGGCTTATCAGG AATAGGACTTGATACTAAEST: gi|192303061|gb|FG994179.1|FG994179
genomic: TTCAGTTGAGAATGCCAAG-AAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAAT-GGACTTGATACTAA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|9983978|gb|BE658086.1|BE658086
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|193390968|gb|FK353752.1|FK353752
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAEST: gi|193611659|gb|FK560864.1|FK560864
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG AATGGACTTGATACTAAAGTA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc