Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209727380|gb|BW651928.1|BW651928EST: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAG GAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
genomic: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
EST:
gi|31473825|gb|CD415853.1|CD415853EST: GGTTGAACAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAG GAAACCAACGATAATTTGGAGGATGCACAGCAACGAGTTGATTCTCACAGA
genomic: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCA-AGCAACGAGTTGATTCTCACAGA
EST:
gi|192296333|gb|FG989786.1|FG989786EST: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAG GAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
genomic: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
EST:
gi|254319229|gb|GR830577.1|GR830577EST: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAG GAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
genomic: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
EST:
gi|192297215|gb|FG990591.1|FG990591EST: TGAGATCAAAATCGCTAAG GAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
genomic: TGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
EST:
gi|209727379|gb|BW651927.1|BW651927EST: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAG GAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
genomic: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
EST:
gi|254319228|gb|GR830576.1|GR830576EST: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAG GAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
genomic: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
EST:
gi|151396125|gb|EV266002.1|EV266002EST: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAG GAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
genomic: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
EST:
gi|298174302|gb|HO017638.1|HO017638EST: GGTTGAACAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAG GAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
genomic: GGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctatt ... atctttacagGAAACAAACGATAATTTGGAGGATGCAAGCAACGAGTTGATTCTCACAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGACGGAAGTGACATGGGAGGACCAGCAGAACATCAACAAATTCGGAAGGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCAAAATCGCTAAGgtaatctattcaactctttatttccacttcagtttctgcacctatcattctcatccttgtgttgtgtttagtgtattatgcgcagaacatcaaaggttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA