Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttcttgttgcatttatcggttatatttatgtgcagattaagggttttacgctaacatatgatctttgacacgtgttaaattgtag

Basic information

species Glycine max
transcript GLYMA20G28860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28860.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G14710.1 (Arabidopsis thaliana), 5'ss of exon 2
GATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttcttgt-tgcatttatcggttatatttatgtgcagattaagggttttacgctaacatatgatctttgacacgtgttaaattgtag
|| ||  | || || ||||| ||||||||||| || || ||||| ||||| || |||||||| || || ||||||||| | || |||||| ||||||| |||   ||  |||| ||  |  ||    | |  || | |     |      || |    | | || | || ||||    |||           
GAAGTGATCCAGGCATGGTATATGGATGATAGCGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGgt---ctctttgtgtgtttcaattcagtgttcttctctctgtttctctatttgt---ttcagatgtaatgtttg---tgtgcag--------

upper sequence: GLYMA20G28860.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G14716.1 (Arabidopsis thaliana), 5'ss of exon 2
GATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttcttgttgcattt--atcggttatatttatgtgcagattaagggttttacgctaacatatgatctttgacacgtgttaaattgtag
|| ||  ||||||| ||||| |||||||||||||| || ||||| ||||| || |||||||| || || || |||||||| ||||||||| ||||||| |||   | ||||  ||  |||  ||    | |  || | | | | ||     ||||    | |||| | || ||||    |||           
GAAGTGATTCAAGCTTGGTATATGGATGATAGTGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAAGAGTTTGTATCGTTGGACAAACTTGCAGgtccccctctttgtgtgtttcaattcaatgttgttctct-ctgcttctctattttgt-ttcacatgtaatgtttg---tgtgcag--------

upper sequence: GLYMA20G28860.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0020g04080.t01 (Vitis vinifera), 5'ss of exon 2
GATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttcttg-ttgcatttatcggttatatttatgtgcagattaagggttttacgctaacatatgatctttgacacgtgttaaattgtag
|| ||||| || || ||||| |||||||||||||||||||| ||||| |||||||| |||   || |||||||| ||||| || ||||||||||||||| ||| |  | ||    | |  | | | | | |        |  |||||  | ||  | |||||   || || |     ||  |||  ||| ||
GAAGTCCTACAGGCATGGTATATGGATGATAGTGATGAAGACCAAAGGCTCCCCCATCACCGGGATCCCAAGGAATTTGTGTCCTTGGACCAACTTGCTAgtatgtattttaaccgtaaatgttgttcagaccatgaaacccattaaaaggttgtcactaac---tgctcatgag--cgatttaccttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888471|gb|BQ741684.1|BQ741684
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|213611023|gb|DB970950.1|DB970950
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|16995955|gb|BM085327.1|BM085327
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|7283499|gb|AW596106.1|AW596106
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|21479899|gb|BQ576582.1|BQ576582
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGATACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|254333158|gb|GR850408.1|GR850408
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298198321|gb|HO039860.1|HO039860
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|13477757|gb|BG507506.1|BG507506
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|37994412|gb|CF806158.1|CF806158
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|19053712|gb|BM732379.1|BM732379
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298196159|gb|HO044550.1|HO044550
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|213617570|gb|DB969282.1|DB969282
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|192312869|gb|FK005453.1|FK005453
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|192312868|gb|FK005452.1|FK005452
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|120492785|gb|EH220952.1|EH220952
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298182107|gb|HO026282.1|HO026282
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|209704933|gb|BW661723.1|BW661723
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|151396296|gb|EV266173.1|EV266173
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|193470005|gb|FK436786.1|FK436786
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|209728724|gb|BW655417.1|BW655417
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|120492659|gb|EH220826.1|EH220826
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298189869|gb|HO038272.1|HO038272
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|13252127|gb|BG363030.1|BG363030
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|26060181|gb|CA803095.1|CA803095
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|120492941|gb|EH221108.1|EH221108
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|22522689|gb|BU081500.1|BU081500
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|24136099|gb|BU926609.1|BU926609
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|21887607|gb|BQ740820.1|BQ740820
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|21257093|gb|BQ453981.1|BQ453981
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|37995644|gb|CF807233.1|CF807233
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298175141|gb|HO014944.1|HO014944
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298184335|gb|HO029548.1|HO029548
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298170432|gb|HO019056.1|HO019056
EST:     CCCCACCACAAAGAACCCAAGTGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCACCACAAAGAACCCAAG-GAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298189141|gb|HO037544.1|HO037544
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|192297717|gb|FG989952.1|FG989952
EST:     -CCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|26059241|gb|CA802155.1|CA802155
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298179497|gb|HO027968.1|HO027968
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|151396844|gb|EV266717.1|EV266717
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGCCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|193566133|gb|FK524608.1|FK524608
EST:     GTTGGACCAACTTGCTG                         AACTTGGAG-CCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: GTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298184623|gb|HO029836.1|HO029836
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|12689395|gb|BG155792.1|BG155792
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|254338222|gb|GR849747.1|GR849747
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|19052601|gb|BM731268.1|BM731268
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|209706331|gb|BW680691.1|BW680691
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|192294801|gb|FG987490.1|FG987490
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|6963527|gb|AW432220.1|AW432220
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|6719759|gb|AW307406.1|AW307406
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|213601717|gb|DB972425.1|DB972425
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|7233975|gb|AW569317.1|AW569317
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|254332911|gb|GR850161.1|GR850161
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|11413256|gb|BF425267.1|BF425267
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|254326218|gb|GR840810.1|GR840810
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|26058060|gb|CA800974.1|CA800974
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|298181742|gb|HO025917.1|HO025917
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|207758686|gb|GD728732.1|GD728732
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|7925120|gb|AW831146.1|AW831146
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|209706869|gb|BW683209.1|BW683209
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|4295457|gb|AI442336.1|AI442336
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|254324010|gb|GR836242.1|GR836242
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|254336202|gb|GR842381.1|GR842381
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|11413845|gb|BF425856.1|BF425856
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|15813927|gb|BI786202.1|BI786202
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|254323704|gb|GR836043.1|GR836043
EST:     CCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|10238192|gb|BE807080.1|BE807080
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|207705544|gb|GD689438.1|GD689438
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|8827472|gb|BE211202.1|BE211202
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|193570260|gb|FK525331.1|FK525331
EST:     CGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|193701216|gb|FK638661.1|FK638661
EST:     CGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|151408479|gb|EV278287.1|EV278287
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|8827270|gb|BE211000.1|BE211000
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|9898912|gb|BE607880.1|BE607880
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|23052890|gb|BU577381.1|BU577381
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: gi|193334758|gb|FK300578.1|FK300578
EST:     CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG                         AACTTGGAGTCCTTAGCTGGAAACTAGATG
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTCCTTCAAGCCTGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttcttgttgcatttatcggttatatttatgtgcagattaagggttttacgctaacatatgatctttgacacgtgttaaattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG