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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTCGGTGAAAGTGTTTGATTTGAATGGAAACGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttatcatatttactacacaaattaagttaccctttagctagtttgagtttgtttagtattcacttgtgctccttttttctctgtacatttacag

Basic information

species Glycine max
transcript GLYMA19G36130.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36130.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G37240.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGATTCGGTGAAAGTGTTTGATTTGAATGGAAACGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttatcatatttactacacaaattaagttaccctttagctagtttgagtttgtttagtattcacttgtgctccttttttctctgtacatttacag
| ||| | |||||||| || |||||||  ||||| | |||||| |||||||| || |||||||||||||| |||||||| |||||||| || || ||||||| ||||| |||| | || |  |  | |   |||    | |  ||| | ||    | | ||  |||  |||||  |  |||                   
TAGATACAGTGAAAGTCTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCCGTTGTTGCATTTGCTCGTCATTTTGGgtaattttctcat-tatatttgatgattctggtt----tatgacta-tgtgtaactatctaagatt-gcttgttatgttttcag----------------

upper sequence: GLYMA19G36130.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0040g03130.t01 (Vitis vinifera), 5'ss of exon 2
TGGATTCGGTGAAAGTGTTTGATTTGAATGGAAACGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattt-----tatcatatttac-tacacaaattaagttaccctttagctagtttgagtttgt-------ttagtattcacttgtgctccttttttctctgtacatttacag--------------
|||||   | | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||| ||||| ||||||||  ||     | |||  ||||   |  ||| | |   |   | || |||  ||  || ||          | | | | |    |     | ||| || | ||   ||   |              
TGGATAGAGCGCAAGTGTTTGATTTGAATGGAAACGGGATTCCAATTTCTGATTTGTGGAAAGATAGAAAAGCTGTGGTGGCATTTGCTCGCCATTTTGGgtgtgttctgtttttcagttttatgcatccaattcattatgaacctttgcttattaaagcttccagaagcacttgcactgatcactctatttatttcctttatattgttcttgattatttactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258245|gb|BE346392.1|BE346392
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|151403056|gb|EV272866.1|EV272866
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|9258744|gb|BE346891.1|BE346891
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|192297273|gb|FG990621.1|FG990621
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|15287410|gb|BI471301.1|BI471301
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|15202597|gb|BI425484.1|BI425484
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|15284825|gb|BI468716.1|BI468716
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|120496088|gb|EH224255.1|EH224255
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|9902843|gb|BE611811.1|BE611811
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|27425152|gb|CA936672.1|CA936672
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|117557702|gb|EG702087.1|EG702087
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|27809251|gb|CB063673.1|CB063673
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
EST: gi|31473394|gb|CD415407.1|CD415407
EST:     GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGG                         GTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG
genomic: GACTTGTGGAAAGATAGGAAAGCCGTTGTGGCATTTGCACGCCACTTTGGgtgattttat ... acatttacagGTGCGTGTTGTGCCGCAAAAGGGCTGATTATCTTTCATCCAAGAAG