1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGGtaaacacggagactttgatcttctaatagaatggaggaattatcaacttatactaaaaacttaaaacatacattttctttttgttttctattcccttttacttgttagacatgtctaacttgttttttcaaatatgttctgtaga
species | Glycine max |
transcript | GLYMA18G11030.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGA GACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAEST: gi|14011541|gb|BG726463.1|BG726463
genomic: GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGGtaaacacgga ... gttctgtagaGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
EST: AGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGA GACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAEST: gi|19935326|gb|BQ080356.1|BQ080356
genomic: GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGGtaaacacgga ... gttctgtagaGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
EST: GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGA GACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
genomic: GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGGtaaacacgga ... gttctgtagaGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGGtaaacacggagactttgatcttctaatagaatggaggaattatcaacttatactaaaaacttaaaacatacattttctttttgttttctattcccttttacttgttagacatgtctaacttgttttttcaaatatgttctgtaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG