Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAGATCACGATATTGGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttcagttgtttcctatgctgattaagaaaagttcatgctatgagaagcaaggaatactatggcttattggcttttagtcatctaattcttttc...

Basic information

species Glycine max
transcript GLYMA18G10060.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185972|gb|HO031133.1|HO031133
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTTGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|14989982|gb|BI315655.1|BI315655
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|298187958|gb|HO031915.1|HO031915
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGT-CCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTTGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|37996838|gb|CF808427.1|CF808427
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCANA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCCTTT-GAATTTGAGGA
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGC-TTTCGAATTTGAGGA
EST: gi|15203335|gb|BI426103.1|BI426103
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|21286010|gb|BQ473881.1|BQ473881
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|26048855|gb|CA785308.1|CA785308
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTT
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTT
EST: gi|192328423|gb|FK020711.1|FK020711
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|298169593|gb|HO020953.1|HO020953
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTTGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|207683636|gb|GD665499.1|GD665499
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCG
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCG
EST: gi|10710570|gb|BF010288.1|BF010288
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTATTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|151404720|gb|EV274534.1|EV274534
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|192328424|gb|FK020712.1|FK020712
EST:     AGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: AGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|23728346|gb|BU762225.1|BU762225
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|298173914|gb|HO017250.1|HO017250
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTTGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|15337095|gb|BI497751.1|BI497751
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|298192925|gb|HO033359.1|HO033359
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTTGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|254334673|gb|GR844458.1|GR844458
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|192309834|gb|FK002946.1|FK002946
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATTGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|192309833|gb|FK002945.1|FK002945
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATTGTCGCAAGGACATGCTTTCGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC
EST: gi|20449153|gb|BQ253277.1|BQ253277
EST:     GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAA                         AACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTTGAATTTGAGGAC
genomic: GGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAgtgagtgttc ... tgatgcacagAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGAC