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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGACATGCAAGCCCTAAGGTCTCTTGAGGTTGACTCTCAGACTGTTATTCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGGCAGgtataacataattgcaactctctatgatccttttatttaagaaaagaagaaacctctaatgtttccttcacttatgtttcaaatcag

Basic information

species Glycine max
transcript GLYMA17G01960.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208094713|gb|GD895320.1|GD895320
EST:     TCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGGCAG                         GAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATT
genomic: TCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGGCAGgtataacata ... ttcaaatcagGAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATT
EST: gi|298195618|gb|HO044009.1|HO044009
EST:     TCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGTCAG                         GAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATT
genomic: TCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGGCAGgtataacata ... ttcaaatcagGAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATT
EST: gi|213596020|gb|DB966295.1|DB966295
EST:     TCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGGCAG                         GAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATT
genomic: TCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGGCAGgtataacata ... ttcaaatcagGAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATT
EST: gi|151411926|gb|EV281737.1|EV281737
EST:     TCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGGCAG                         GAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATT
genomic: TCGAGCAATTACTCCTGCCCTTGATCCTACCAGACACAAAGGCCAGGCAGgtataacata ... ttcaaatcagGAAATATAGCTGTTATTGGAGGTTGCCGTGAATACACAGGTGCTCCATATT