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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCAAATGCTATCAAGCAGGTCAAGTTTGAACCTGTTAAAATTTCGCTTAAGGATTGTTTGGCATGCAGgtttgtctttgtatttctttctctttctctgcttagtacccctagttttacaagtcaacggatgtatttggctgctgtacttgtttctgtgtttagtaaa...

Basic information

species Glycine max
transcript GLYMA17G01120.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01120.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G16440.1 (Arabidopsis thaliana), 5'ss of exon 2
GTATCAAATGCTATCAAGCAGGTCAAGTTTGAACCTGTTAAAATTTCGCTTAAGGATTGTTTGGCATGCAGgtttgtctttgtattt-ctttctctttctctgcttagtacccctagttttacaagtcaacggatgtatttggctgctgtacttgtttctgtgtttagtaaa
||    | |||    || |||    || ||||||| ||||||||||| || |||||||| ||||| |||||||||||| |   |||| |||| |||   || | ||   |        | ||   ||  | | ||    ||   | | |                       
GTTGTGATTGCCCCAAAACAGC---AGCTTGAACCGGTTAAAATTTCTCTCAAGGATTGCTTGGCTTGCAGgtttgtcctctcatttactttgtctgagtcagttttagagtttagagtgtaatggtttatgtatacgatta--tacag-----------------------

upper sequence: GLYMA17G01120.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0508g00020.t01 (Vitis vinifera), 5'ss of exon 2
GTATCAAATGCTATCAAGCAGGTCAAGTTTGAACCTGTTAAAATTTCGCTTAAGGATTGTTTGGCATGCAGgtttgtctttgtatttctttctctttctctgcttagtacccctagttttacaagt-caacggatgtatttggctgc-tgtacttgtttctgtgtttagtaaa---
||    |  | || |||    |  ||   |||||||||||| ||||||||||||||||| || ||||||||||    || |    ||||  | | | || |       |  |  ||| | |  |   ||| |   |||  ||    | || |    |||  |   ||| ||||   
GTTGTGACGGGTACCAAATCAGCAAACACTGAACCTGTTAAGATTTCGCTTAAGGATTGCTTAGCATGCAGgtacaactct----ttctcccccatgcttt-taagaaatgcagagtctgatgaacgcaatgagagtacatgataacatgcatggatttaaggacttaataaaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331967|gb|FK024511.1|FK024511
EST:     GTCAAGTTTGAACCTGTTAAAATTTCGCTTAAGGATTGTTTGGCATGCAG                         TGGATGCGTCACATCAGCAGAGACAGTTATGCTGGAGAAGCAAAGTTTGGA
genomic: GTCAAGTTTGAACCTGTTAAAATTTCGCTTAAGGATTGTTTGGCATGCAGgtttgtcttt ... ggtaatgcagTGGATGCGTCACATCAGCAGAGACAGTTATGCTGGAGAAGCAAAGTTTGGA