1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAGTAGAACTACCTGGAGGGTTGTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATGgtaaattttgtctttccaatagttcttagtttagggtttgcatatgtggagaaatcttattcatttcttcaatcattttgtttactttctgctgaatttt...
species | Glycine max |
transcript | GLYMA13G26280.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATG CTATACAGAGGGGAACACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGCEST: gi|254339871|gb|GR857996.1|GR857996
genomic: CGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATGgtaaattttg ... tggttttcagCTATACAGAGGGGAACACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGC
EST: GAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATG CTATACAGAGGGGAACACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGCEST: gi|192312700|gb|FK004388.1|FK004388
genomic: GAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATGgtaaattttg ... tggttttcagCTATACAGAGGGGAACACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGC
EST: GAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATG CTATACAGAGGGGAACACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGCEST: gi|192312701|gb|FK004389.1|FK004389
genomic: GAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATGgtaaattttg ... tggttttcagCTATACAGAGGGGAACACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGC
EST: GAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATG CTATACAGAGGGGAACACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGC
genomic: GAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATGgtaaattttg ... tggttttcagCTATACAGAGGGGAACACAATTGATTCTTTTCGTGTTTCTGACTTTGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTAGAACTACCTGGAGGGTTGTTGGTGTTGAAGATGACAAGGGAGCTGAAAGAGGAATGCCGAGCTTCAATTCTGAGTTACCCAATTCCAATTCATGgtaaattttgtctttccaatagttcttagtttagggtttgcatatgtggagaaatcttattcatttcttcaatcattttgtttactttctgctgaatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT