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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAAGTAGAAGTGAGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGTCGCAGTGATCTCTCCGCTTGGGAATCTCATgtaagtcttgacttgttatcatgtctttaatggagaatttgcttcataaaactttccatggatctttttgaatcatatgttgggtaacaagtgaccagca...

Basic information

species Glycine max
transcript GLYMA09G29070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G24760.3 (Arabidopsis thaliana), 5'ss of exon 2
GGAGGAAGTAGAAGTGAGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGTCGCAGTGATCTCTCCGCTTGGGAATCTCATgta---agtcttgacttgttatcatgtctttaatggagaatttgcttcataaaactttccatggatctttttgaatcatatgttgggtaacaagtgaccagca
||||||||| ||||||||||| || |||||| | ||||| || ||||| ||||| |  || ||||||||||| ||||||||||| |||||||||||||| ||    ||| |    |  |||  ||  | |        | || |||| ||||   | ||    ||  | |      ||| | | |   |              
GGAGGAAGTTGAAGTGAGTCCACCTCAACCACTTGAGATCAGAATTAAAGTTGTATGTACATCTCTCTGTCGTAGTGATCTCTCTGCTTGGGAATCTCAGgtttgcagtttctcttctttactataacctgttcatgtatttggctttataagtgtctctgatgaagtctc-----catttatggtacag-------------

upper sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 2
---GGAGGAAGTAGAAGTGAGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGTCGCAGTGATCTCTCCGCTTGGGAATCTCATgtaagtc--ttgacttgttatcatgtctttaatggagaat-----ttgcttcataaaactttccatggatctttttgaatcatatgttgggtaacaagtgaccagca
    || ||||| ||||| || || || || || ||||||||||||||||| ||||||||||| |||||||| ||||||||| || ||||||||   ||||| || |     |   |   || |||  |  || ||    |||     ||  ||      |  |||| | | | ||  ||  |  ||   | |  |  || |        
GATAGAAGAAGTGGAAGTCAGCCCGCCACAGCCTATGGAGATTAGGATTAAAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGG---TCTCAGgtcaactcatctccacattttcaccttcttcatttctaatccctatttatttgcttcatattccttagttgttaatggctattagacttgccattaattt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400617|gb|EV270431.1|EV270431
EST:     TCCGCTTGGGAATCTCAT                         GCCATATTTCCTCGCATATTTGGCCACGAAGCATCATG
genomic: TCCGCTTGGGAATCTCATgtaagtcttg ... ttttttgcagGCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGG
EST: gi|298197385|gb|HO044864.1|HO044864
EST:     TTGTCTCCACCTCTCTCTGTCGCAGTGGTCTCTCCGCTTGGGAATCTCAT                         GCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGG
genomic: TTGTCTCCACCTCTCTCTGTCGCAGTGATCTCTCCGCTTGGGAATCTCATgtaagtcttg ... ttttttgcagGCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGG
EST: gi|209727032|gb|BW680326.1|BW680326
EST:     TTGTCTCCACCTCTCTCTGTCGCAGTGATCTCTCCGCTTGGGAATCTCAT                         GCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGG
genomic: TTGTCTCCACCTCTCTCTGTCGCAGTGATCTCTCCGCTTGGGAATCTCATgtaagtcttg ... ttttttgcagGCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGG