Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTCTCTGTGTGCGTGGGGGTTGTGACTTCACAGTTAAAGCTGATTTTGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAGgtcaatcatgactcatgactattaaggcaactccacaagctgcaacttatttattactcactctcctttcttttttgcttttgtcag

Basic information

species Glycine max
transcript GLYMA08G47600.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208326478|gb|GE120230.1|GE120230
EST:     TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAG                         ATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAATATTTCAATTC
genomic: TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAGgtcaatcatg ... cttttgtcagATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAATATTTCAATTC
EST: gi|208288682|gb|GE088825.1|GE088825
EST:     TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAG                         ATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAA
genomic: TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAGgtcaatcatg ... cttttgtcagATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAA
EST: gi|192299391|gb|FG988733.1|FG988733
EST:     TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAG                         ATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAATATTTCAATTC
genomic: TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAGgtcaatcatg ... cttttgtcagATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAATATTTCAATTC
EST: gi|42722407|gb|CK768310.1|CK768310
EST:     TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAG                         ATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAATATTTCAATTC
genomic: TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAGgtcaatcatg ... cttttgtcagATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAATATTTCAATTC
EST: gi|7147508|gb|AW509430.1|AW509430
EST:     TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAG                         ATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAATATTTCAATTC
genomic: TGCACAGTCTGTAGGTGCTACTGCCATGTTGGTCATCAACGACGCACAAGgtcaatcatg ... cttttgtcagATCTCTTTGAGATGGTTTGCTCCAATAGCACTGAAGCTAATATTTCAATTC