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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTCCTAAATCAAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACCCCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTgtaagtgaaatactctgactttctctgtggtcattgtattgtgcttttgcaccttgttggatgcaatgtggagctaatgtttgaaatgtctttgagcag

Basic information

species Glycine max
transcript GLYMA08G04180.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330182|gb|GR839735.1|GR839735
EST:     CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACT                         ATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
genomic: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTgtaagtgaaa ... ctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
EST: gi|193380716|gb|FK347441.1|FK347441
EST:     TAAACATTCAAAATGCCTGAAACT                         ATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
genomic: TAAACATTCAAAATGCCTGAAACTgtaagtgaaa ... ctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
EST: gi|193398454|gb|FK362094.1|FK362094
EST:     CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAGCT                         ATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
genomic: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTgtaagtgaaa ... ctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
EST: gi|18730183|gb|BM525733.1|BM525733
EST:     CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACT                         ATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
genomic: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTgtaagtgaaa ... ctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCTCCTAAATCAAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACCCCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTgtaagtgaaatactctgactttctctgtggtcattgtattgtgcttttgcaccttgttggatgcaatgtggagctaatgtttgaaatgtctttgagcag

- - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC