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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAATGCCACCATCTCTGCGCCGCATATGCATGCCACCTGCCTTCAGTTGCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttcatgaactattttctataattattgccagagccaatgagctatctataattactttttcttttctaatttattctaatgtattaaagagaaa...

Basic information

species Glycine max
transcript GLYMA05G02810.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406312|gb|EV276127.1|EV276127
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
EST: gi|298198196|gb|HO039735.1|HO039735
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
EST: gi|151406582|gb|EV276397.1|EV276397
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
EST: gi|192304333|gb|FG996459.1|FG996459
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
EST: gi|151405371|gb|EV275185.1|EV275185
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCCTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
EST: gi|151401850|gb|EV271663.1|EV271663
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
EST: gi|15813132|gb|BI785407.1|BI785407
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
EST: gi|9440177|gb|BE440687.1|BE440687
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
EST: gi|151395357|gb|EV265228.1|EV265228
EST:     GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCG                         GAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC
genomic: GCTTGAGAAGAATTTGCAACCTGGAATGCGTGTTCTTGACGTTGGCTCCGgtatagttca ... ccctttgcagGAACGGGATACCTGACAGCATGCTTTGCCTTGATGGTTGGACCCCAAGGCC