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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAGTCTATGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATCCCCAGgtaaaggttctttccttgttttgttgtttcctcaatgataatattgtcttacctaattctgtttgtccttttctaaatgtaacgcag

Basic information

species Glycine max
transcript GLYMA08G19960.1
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208031714|gb|GD831236.1|GD831236
EST:     TGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATCCCCAG                         ATCCTGTCCCTAGT
genomic: TGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATCCCCAGgtaaaggttc ... tgtaacgcagATCCTGTCCCTAGT
EST: gi|22521906|gb|BU080717.1|BU080717
EST:     TGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATCCCCAG                         ATCCTGTCCCTAGTCCCTGAATTAGTTAATCTTTTTGCTCTAGTGGTGGTA
genomic: TGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATCCCCAGgtaaaggttc ... tgtaacgcagATCCTGTCCCTAGTCCCTGAATTAGTTAATCTTTTTGCTCTAGTGGTGGTA