1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ACTGGCTTCATGCAGGAACCAAACCCTATGCAAGGTCAAGGCTTCCCATTTAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAGgtaaaaatttgatgtacattactattgtgcttgcttttgtatgattataattattgaagctaacttgattgcataaaaaattcacaattgtgcttgctgt...
species | Glycine max |
transcript | GLYMA18G47220.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TAATGGTCACCAGCATCCTACTTATGGTGGCCCTGGAATGCAATTACAAG CTCCTGATGTTGGCGGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTTEST: gi|13791654|gb|BG654245.1|BG654245
genomic: TAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAGgtaaaaattt ... atttcattagCTCCTGATGTTGGCGGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTT
EST: TAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAG CTCCTGATGTTGGCGGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTTEST: gi|9259588|gb|BE347735.1|BE347735
genomic: TAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAGgtaaaaattt ... atttcattagCTCCTGATGTTGGCGGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTT
EST: TAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAG CTCCTGATGTTGGCTGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTTEST: gi|51335729|gb|CO979595.1|CO979595
genomic: TAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAGgtaaaaattt ... atttcattagCTCCTGATGTTGGCGGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTT
EST: TAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAG CTCCTGATGTTGGCGGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTTEST: gi|8827397|gb|BE211127.1|BE211127
genomic: TAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAGgtaaaaattt ... atttcattagCTCCTGATGTTGGCGGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTT
EST: GAGTG-TCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAG CTCCTGATGT-GGCGGTGGAAGAA-TCATCCAGAAGCACT-CAGAGGCTTT
genomic: AA-TGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAGgtaaaaattt ... atttcattagCTCCTGATGTTGGCGGTGGAAGAAATCATCCAGAAGCACTTCAGAGGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGGCTTCATGCAGGAACCAAACCCTATGCAAGGTCAAGGCTTCCCATTTAATGGTCACCAGCATCCTACTTTTGGTGGCCCTGGAATGCAATTACAAGgtaaaaatttgatgtacattactattgtgcttgcttttgtatgattataattattgaagctaacttgattgcataaaaaattcacaattgtgcttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaaa