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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGCAGGGTGTACAGAGAACGGCTTTTGCGCCAGTGGGGAATAGTTGATGTTAATGACTGTTGTAGTTGTGCTACATATTTGgtaattgttttgttttattgtttcctacttttttggttgatggatctgttataagaaagtttatatgatataatctattatctag

Basic information

species Glycine max
transcript GLYMA18G11480.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11480.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G36210.1 (Arabidopsis thaliana), 5'ss of exon 13
GTTATGGCAGGGTGTACAGAGAACGGCTTTTGCGCCAGTGGGGAATAGTTGATGTTAATGACTGTTGTAGTTGTGCTACATATTTGgtaattgttttgttttattgtttcctacttttttggttgatggatctgttataagaaagtttatatgatataatctattatctag
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GTTATGGTCGAGAGTATCGAGAGCGGTTGTTAAGGCAGTGGGGAATAGTCGACGTTGATGACTGTTGTGGCTGTGCTAAATACTTGgta-------tgttctttcttcgcctattttat--gtgaacgactttg----aaagcatttcctaaacttttttggtttgggcag

upper sequence: GLYMA18G11480.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g11140.t01 (Vitis vinifera), 5'ss of exon 13
GTTATGGCAGGGTGTACAGAGAACGGCTTTTGCGCCAGTGGGGAATAGTTGATGTTAATGACTGTTGTAGTTGTGCTACATATTTGgtaattgt--tttgttttattgtttccta-cttttttggttgatggatctgttataagaaagtttatatgatataatctattatctag
|||||||||| |  ||  |||| ||||||||| |||  |||||||| |||||||| ||||||||||| |||||||||| || |||||||||| |  |||  ||| |  |     | | |  |  | |  ||  |     |||| ||  || ||||| |    ||| |       
GTTATGGCAGAGAATATCGAGAGCGGCTTTTGGGCCGCTGGGGAATTGTTGATGTAAATGACTGTTGCAGTTGTGCTAGATTTTTGgtaattatcctttagtttgtgatggatgaacatgctaagatattgtttaaaacataataatattcatatggt----tctgtag-----