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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCAATCTGCTCTTATACTTAGCATTCCTAGGCGCAGGCCAGGAGATGAAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGgtaagttttgattaatgaagtgcttgattttgtaaagtcaataccgagactgatatcttcattttggttctgtttatgttcag

Basic information

species Glycine max
transcript GLYMA08G47680.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47680.3 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 15
GGATCAATCTGCTCTTATACTTAGCATTCCTAGGCGCAGGCCAGGAGATGAAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGgtaagttttgattaatgaagtgcttgattttgtaaagtcaataccgagactgatat-cttcattttg-----gttctgtttatgttcag-----------
|||||||||||| || ||  | ||  | || | |||||  || || |||||||| |||||||||||  | ||||| || |||||||| ||||||||||||||||    | | |    |    |   |      | | ||| | | ||     || | | |||||        |    ||  ||||               
GGATCAATCTGCACTCATCTTGAGTGTGCCCAAGCGCAAACCTGGTGATGAAACTCAGGAAACTCTTAGGACATCCCAGTTTCCAAGTACACATGTTAAGgtaaacgataaatggatacacacgctacaaaacatattcattcctgacttgtatgtacgtcattacaaaagagaagagtccatgtctgctatagaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7235191|gb|AW570520.1|AW570520
EST:     AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
genomic: AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGgtaagttttg ... ttatgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
EST: gi|209715931|gb|BW650948.1|BW650948
EST:     AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
genomic: AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGgtaagttttg ... ttatgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
EST: gi|193642235|gb|FK587195.1|FK587195
EST:     AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
genomic: AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGgtaagttttg ... ttatgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
EST: gi|254346225|gb|GR859838.1|GR859838
EST:     AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
genomic: AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGgtaagttttg ... ttatgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
EST: gi|209723932|gb|BW651374.1|BW651374
EST:     AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
genomic: AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGgtaagttttg ... ttatgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
EST: gi|6914570|gb|AW396100.1|AW396100
EST:     AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAG                         GAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA
genomic: AAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGgtaagttttg ... ttatgttcagGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACA