Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCTCTATACACCCGATGCAGATTTTTCTTGCTTTGCAGACCTTGCACTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgtttgcaatctcacacttctaaattttcacttccattcatgagttgtttacttgaaaataatttataagaaagatttaagtgttttgcttgagt...

Basic information

species Glycine max
transcript GLYMA20G37170.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 5'ss of exon 11
ACCTTCTCTATACACCCGATGCAGATTTTTCTTGCTTTGCAGACCTTGCACTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaag--tgtttgcaatctcacacttctaaattttcacttccattcatgagttgtttacttgaaaataatttataagaaagat--ttaagtgttttgcttgagt
| |||||||| || || |||||||||||||| || ||| |||||||||||||||||||||| |  || || |||||||| |||||||| || ||| |||||||||  |  || |  |  ||   |  |   ||||    ||      | ||||      || |   |  || | |    | ||  || | | || |   |    
ATCTTCTCTACACTCCAGATGCAGATTTTTCATGTTTTTCAGACCTTGCACTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctactttctcttccatgttctttgcttttgtggtctggaattaagtttgaccattcagtgttcttgacatttgatatcattcactattgtagct----

upper sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 11
ACCTTCTCTATACACCCGATGCAGATTTTTCTTGCTTTGCAGACCTTGCACTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgtttgcaatctcacacttctaaattttcacttccattcatgagttgtttacttgaaaataatttataagaaagatttaagtgttttgcttgagt-
| || || || || || || ||||| || ||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |         ||    || |    || |   |   || || | |  |   |||||   |||| | |    |   || |  |  |       |   
ATCTCCTTTACACCCCAGACGCAGACTTCTCTTGCTTTGCCGATCTAGCACTTTCATCTCCAGAAGATTACTACATTGAGGGACAAGGTTCATTGCTCCAgtaagcgaaattttcttcttgtttgttttattactactgtttttatcattaatactcttgattttaatgtgtttctatt-ttgagataatacaaaacaacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496110|gb|EH224277.1|EH224277
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|23064255|gb|BU579028.1|BU579028
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|213602074|gb|DB981924.1|DB981924
EST:     ACAAGGATCATTGCTCCA                         ATGTGCCCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: ACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|120495894|gb|EH224061.1|EH224061
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|23064112|gb|BU578885.1|BU578885
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|254340372|gb|GR858497.1|GR858497
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|10236984|gb|BE805872.1|BE805872
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|120496009|gb|EH224176.1|EH224176
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|151398068|gb|EV267946.1|EV267946
EST:     CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCA                         ATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
EST: gi|22928471|gb|BU545610.1|BU545610
EST:     CTTTCANNNCCAGAAGATTATTACANNGAGGGACAAGGATCATTGCTCCA                         ATGTGTNCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT
genomic: CTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgttt ... tatttgtcagATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTACCAAATGACGAAAT