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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAGgtacaatctatgatccatattggtagtaactctgcttgaaatgttgcgtgttattgacttcctgcattttttgtcactttccttcattgctacataagttacaatttatcatacacgattacatgttgatctcgccttaaacatgatctctttctctctatggattcctgataactttatctttttttattatgaag

Basic information

species Glycine max
transcript GLYMA18G11950.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G16630.1 (Arabidopsis thaliana), 5'ss of exon 11
GGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAGgtacaatctatgatccatattggtagtaactctgcttgaaatgttgcgtgttattgacttcctgcattttttgtcactttccttcattgctacataagttacaatttatcatacacgattacatgttgatctcgccttaaacatgatctctttctctctatggattcctgataactttatctttttttattatgaag
|| |||||||| |||||||||||||||||||| || | ||| ||||| || ||  |    ||||| |    | |||  |||||    |||  | || || ||             || |    || |   ||||||   | || || | || |         | |  || || |      || ||                                                                          
GGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAGgtaaa---caagat--atatttcctgta-ttatgattaaa-------------ttaaaaagctactagttttgt---tctctttaactgatgtgaggacaatatgttttcctttgattttgcag-------------------------------------------------------------------------

upper sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 11
GGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAGgtacaatctatgatccatattggtagtaactctgcttgaaatgttgcgtgttattgacttcctgcattttttgtc-actttccttcattgc-tacataagttacaatttatcatacacgattacatgttgatctcgccttaaacatgatctctttctctctatggattcctgataactttatctttttttattatgaag
|| |||||||| |||||||||||||||||||| |||| ||||||||| || |||||||| ||||| ||| ||| | |  | ||     |    || | |    |      ||||  | |     ||  ||  ||||   | ||  ||| ||   |  ||  |                                                                                                   
GGACTTGACATAATTGGTGTTCAAACAGTTATAAACTATGCATGTCCTCGTGATCTTACCAGgta-aatttattaactttttttccctttttccttcgtttttttaaatatgttgctaaaacaatgatttacttgtttgcatttattcgttatgttgatgtgc--------------------------------------------------------------------------------------------------