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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACAGGGAAAAAGGTTCTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattctcttttcagtcccaaacgttgaaaccttacttattcgtgaaataataatttatcgtgattcgttgttcaaattccaagactcgagaaatactttgttttcttgcaataattaaagttggtcgtaaagtgagattaaaaattgaatgtataatcgcgctactcacttgcctatgttgattgattgatgcag

Basic information

species Glycine max
transcript GLYMA10G01820.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317314|gb|FK010545.1|FK010545
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193404625|gb|FK369566.1|FK369566
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|19269559|gb|BM885815.1|BM885815
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208291432|gb|GE094598.1|GE094598
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCNTTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208196718|gb|GD998345.1|GD998345
EST:     AATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: AATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208304602|gb|GE106615.1|GE106615
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAG
EST: gi|193529708|gb|FK487335.1|FK487335
EST:     GCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: GCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|207820518|gb|GD791320.1|GD791320
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193714799|gb|FK651562.1|FK651562
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACT
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACT
EST: gi|7639164|gb|AW733492.1|AW733492
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|213592191|gb|DB983319.1|DB983319
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|207831457|gb|GD802547.1|GD802547
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193313152|gb|FK279107.1|FK279107
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATA
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATA
EST: gi|207829247|gb|GD798923.1|GD798923
EST:     CTGATTATGTTAAGAACGAAATTCTGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|6566734|gb|AW234366.1|AW234366
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|21993939|gb|BQ785467.1|BQ785467
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193410644|gb|FK378871.1|FK378871
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208338017|gb|GE134363.1|GE134363
EST:     CCTACAGCACATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|6072629|gb|AW102016.1|AW102016
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208173285|gb|GD970714.1|GD970714
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|38191688|gb|CF920894.1|CF920894
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|10253234|gb|BE821000.1|BE821000
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|207803287|gb|GD775326.1|GD775326
EST:     TAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: TAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|207791025|gb|GD762414.1|GD762414
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|192327115|gb|FK015507.1|FK015507
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACGGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAGAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|22525057|gb|BU083868.1|BU083868
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCTAATGCTTACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208233588|gb|GE033653.1|GE033653
EST:     GATTATTGCTTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGATAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: GATTA-TGC-TAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|213588075|gb|DB979181.1|DB979181
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCATGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193390114|gb|FK356846.1|FK356846
EST:     CGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|7028084|gb|AW457867.1|AW457867
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|57574002|gb|CX546977.1|CX546977
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208135643|gb|GD936222.1|GD936222
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193467790|gb|FK433127.1|FK433127
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGC
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGC
EST: gi|208210791|gb|GE011796.1|GE011796
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|209711954|gb|BW679033.1|BW679033
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|193532887|gb|FK493281.1|FK493281
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208241596|gb|GE038256.1|GE038256
EST:     CGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208198541|gb|GD997662.1|GD997662
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|298193172|gb|HO033606.1|HO033606
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG
EST: gi|208268995|gb|GE068156.1|GE068156
EST:     CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAG                         TCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCCTG
genomic: CTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattct ... attgatgcagTCCATTAGCCCTGCGAAGGCCGACGAGTTAACTCTAAAGAAAAATATCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACAGGGAAAAAGGTTCTGATTATGCTAAGAACGAAATTCAGCGCCTACAGCGCATTCTTGACAAGgtaatattctcttttcagtcccaaacgttgaaaccttacttattcgtgaaataataatttatcgtgattcgttgttcaaattccaagactcgagaaatactttgttttcttgcaataattaaagttggtcgtaaagtgagattaaaaattgaatgtataatcgcgctactcacttgcctatgttgattgattgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC