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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTATCTAGTGAATTTACGAGGATATTGCAATTCACCTACGTCAAAGTTGTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccctatttgaatacttaactatattttgatcatcatatcaatgcatgaaacagctgtatttttgggtacaagtgtgggcatttaaaggggggt...

Basic information

species Glycine max
transcript GLYMA09G34940.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34940.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G31420.2 (Arabidopsis thaliana), 5'ss of exon 11
CGTTATCTAGTGAATTTACGAGGATATTGCAATTCACCTACGTCAAAGTTGTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccctatttgaatacttaactatattttgatcatcat-atcaatgcatgaaacagctgtatttttgggtacaagtgtgggcatttaaaggggggt
|| || || |||||| |||| ||||||||||||||||| || |||||| |  |  ||||||||||| | || |||||||| ||||| |||||||||||||||| ||||   | |    |  |||    | | ||    || || |   || ||   |  || |   || |||  |   |||                    
CGATACCTCGTGAATCTACGTGGATATTGCAATTCACCAACATCAAAGCTACTGTTATATGATTACTTGCCCGGTGGTAGCCTTGATGAAGCACTTCATGgtatgatc---aatctgctctttatggctctcttccatattatgaatgattcactgagaagtttggttcttgaatt--agtag------------------

upper sequence: GLYMA09G34940.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G31420.1 (Arabidopsis thaliana), 5'ss of exon 11
CGTTATCTAGTGAATTTACGAGGATATTGCAATTCACCTACGTCAAAGTTGTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccctatttgaatacttaactatattttgatcatcat-atcaatgcatgaaacagctgtatttttgggtacaagtgtgggcatttaaaggggggt
|| || || |||||| |||| ||||||||||||||||| || |||||| |  |  ||||||||||| | || |||||||| ||||| |||||||||||||||| ||||   | |    |  |||    | | ||    || || |   || ||   |  || |   || |||  |                          
CGATACCTCGTGAATCTACGTGGATATTGCAATTCACCAACATCAAAGCTACTGTTATATGATTACTTGCCCGGTGGTAGCCTTGATGAAGCACTTCATGgtatgatc---aatctgctctttatggctctcttccatattatgaatgattcactgagaagtttggttcttgaattag-----------------------

upper sequence: GLYMA09G34940.2 (Glycine max), 5'ss of exon 11
lower sequence: AT2G35620.1 (Arabidopsis thaliana), 5'ss of exon 11
CGTTATCTAGTGAATTTACGAGGATATTGCAATTCACCTACGTCAAAGTTGTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccctatttgaatacttaactatattttgatcatcatatcaatgcatgaaacagctgtatttttgggtacaagtgtgggcatttaaaggggggt
||||| || |||||| |||| ||||| ||||||||||| || |||||| |  |  ||||||||||||| || |||||||| ||||| ||||| || ||| |||| | ||  |  |  ||| |||    | |  | | |     || |       |   ||    |||||||  |    |||| |                
CGTTACCTTGTGAATCTACGTGGATACTGCAATTCACCCACATCAAAGCTTCTGCTATATGATTACCTTCCTGGTGGTAGCCTTGATGAAGCTCTACATAgtaa-accctcaacttcatatttacgggtttccttaacggagaattatgattctattaagtgaaatttttgaat----gtgtag----------------

upper sequence: GLYMA09G34940.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 11
CGTTATCTAGTGAATTTACGAGGATATTGCAATTCACCTACGTCAAAGTTGTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccctatttgaatact-taactatattttgatcatcatatcaatgcatgaaacagctgtatttttgggtacaagtgtgggcatttaaaggggggt
 | || || |||||||| ||||||||||||||||| || || || || |||||||| ||||||||| |||| || ||||| || || || || ||||||||| |||||||| | |   | || |   |||  |||||   |  | |   || |||| | |  || ||  |   | | ||   ||   |   |    |  | 
AGATACCTGGTGAATTTGCGAGGATATTGCAATTCTCCCACCTCCAAATTGTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGgtgagatccctttctctcttctatttatatgctttgaatgtgttttatgtgtatgataaacatgcatgatgttgaaaaatgttgcataagcatgatgccg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193721537|gb|FK658693.1|FK658693
EST:     GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATG                         AAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
genomic: GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccc ... cattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
EST: gi|192308735|gb|FG999774.1|FG999774
EST:     GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATG                         AAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
genomic: GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccc ... cattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
EST: gi|19935268|gb|BQ080298.1|BQ080298
EST:     GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATG                         AAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
genomic: GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccc ... cattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG