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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatcacattttcatgttaaatatcacaaatgtatctgagactactatgatcacttgaaacgtgcatatcatcatgtcagattcgttggaccgtg...

Basic information

species Glycine max
transcript GLYMA19G41690.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208165786|gb|GD959490.1|GD959490
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|207828879|gb|GD798512.1|GD798512
EST:     ATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: ATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|208213782|gb|GE010993.1|GE010993
EST:     CTATGCAAAGTAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CTATGCAAAG-AATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|209699182|gb|BW664359.1|BW664359
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|10255939|gb|BE823705.1|BE823705
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|21600775|gb|BQ611106.1|BQ611106
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|207764302|gb|GD735331.1|GD735331
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|58024257|gb|CX710998.1|CX710998
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|207813924|gb|GD785817.1|GD785817
EST:     CGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|209720793|gb|BW657767.1|BW657767
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|15337327|gb|BI497983.1|BI497983
EST:     CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: CAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
EST: gi|213595042|gb|DB979284.1|DB979284
EST:     AGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG                         TCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA
genomic: AGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatc ... tctgatgcagTCAGTCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGgtaatttatcacattttcatgttaaatatcacaaatgtatctgagactactatgatcacttgaaacgtgcatatcatcatgtcagattcgttggaccgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA